DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIC and LOC4576285

DIOPT Version :10

Sequence 1:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster
Sequence 2:XP_061502502.1 Gene:LOC4576285 / 4576285 VectorBaseID:AGAMI1_009844 Length:456 Species:Anopheles gambiae


Alignment Length:430 Identity:95/430 - (22%)
Similarity:158/430 - (36%) Gaps:117/430 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 STGIPHIEFDISDEGIQAEKPNHQMTLNLYPAQAILSKAYADIVQNFGWRKFTIVYDADDARAAA 173
            |:|.  ::|.||      .:|:|.        |||:     |.|:.:||.:...:||:.|  ...
Mosquito    37 SSGF--LDFAIS------MRPDHY--------QAII-----DTVRYYGWDRIIYMYDSHD--GLL 78

  Fly   174 RLQDLLQLREVHND---VVRVRKFHKDDDFRVMWKSIR-----GERRVVLDCEPNMLVELLNSST 230
            |||.:.|.....|:   |..|::.....|.....::|.     ..:.:||||           ||
Mosquito    79 RLQQIYQGLRPGNETFHVETVKRIANVSDAIEFLRTIEELNRWSRKHIVLDC-----------ST 132

  Fly   231 EFGLTGQYNHIFLTNLETYTDH--LEELAADN-------ETFAVNITAARLLVNP---------- 276
            |.......:|:....|...|.|  |..|..|:       |..|:|||..|::...          
Mosquito   133 ELAKDIVVSHVRDITLGKRTYHYLLSGLVMDDRWESEVIEYGAINITGFRIVDTSKKYVKEFLDG 197

  Fly   277 ----DPPPYSLPYGYVTQRDNIVYESSDPPRTLIHDLIHDALQLFAQSWRNASFFYPDRMVVPRI 337
                ||          |.......|.......|::|.:...::.|::..|..    ||:.....:
Mosquito   198 WKRLDP----------TTSQGAGKELISAQAALMYDAVFVLVEAFSKIMRKK----PDQFRAYTM 248

  Fly   338 -----TCDFAASGGRT------------WAMGRYLARLMKGT--SGVNNTNFRTSILQFDEDGQR 383
                 ..:..|:|.||            |..|..::|.::..  ||:      |..::|:|||:|
Mosquito   249 RNRGQPFNLPANGTRTLDCNTSKGWVTPWEHGDKISRYLRKVEISGL------TGDIRFNEDGKR 307

  Fly   384 ITFNIEVYDPLDG---IGIAIWDPRG-------QITQLNVDVKAQKKMIYRVATRIGPPYFSYNE 438
            ..:.:.|.:....   :.:|.|...|       :.|:|..|:..::...|.|.|.|..||....:
Mosquito   308 QNYTLHVVEMTVNSAMVKVAEWSDEGGLAPVVAKYTRLKTDMHYERNKTYIVTTIIEEPYIMLRQ 372

  Fly   439 TARELNLTGNALYQGYAVDLIDAIARHVGFEYVFVPVADQ 478
            ......|..|..::||..||.:.:|:.:|   :..|.|.|
Mosquito   373 PEPGETLETNERFEGYCKDLAELVAKKLG---INCPRASQ 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIICNP_608557.4 Periplasmic_Binding_Protein_type1 26..409 CDD:471960 75/359 (21%)
PBP2_iGluR_Kainate 423..794 CDD:270432 17/56 (30%)
Lig_chan 554..827 CDD:459656
LOC4576285XP_061502502.1 None
Blue background indicates that the domain is not in the aligned region.

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