DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIC and grid2

DIOPT Version :9

Sequence 1:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster
Sequence 2:NP_001004123.1 Gene:grid2 / 448841 ZFINID:ZDB-GENE-040913-1 Length:1009 Species:Danio rerio


Alignment Length:957 Identity:237/957 - (24%)
Similarity:413/957 - (43%) Gaps:154/957 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ILLLGCMWSAFFMCRSRGQQINIGAFFYDDELELEKEFMTVVNAIN-GPESEQTMRFYPLIKRLK 68
            :|.|...||..:........|:|||.|.:...:.::.|...|..:| ..|..:|.:....::.: 
Zfish     7 VLFLITFWSLEWEPVLPDSIIHIGAIFDESAKKDDEVFRMAVADLNLNNEILETEKITVSVEFV- 70

  Fly    69 PEDGSVTMQ--EHACDLIDNGVAAIFGPSSKAASDIVALVCNSTGIPHIEFDISDEG-------- 123
              ||:...|  :.||:|::.|:.|:.......::..:..:.::..|||:....:..|        
Zfish    71 --DGNNPFQAVQEACELMNRGILALVSSIGCMSAGSLQSLADAMHIPHLFIQRAPAGTPRSSCPP 133

  Fly   124 -IQAEKPNHQMTLNLYPAQAILSKAYADIVQNFGWRKFTIVYDAD-DARAAARLQDL-------L 179
             .:|:..::  ||.:.| ...|:.....:|..:.|:||.|.||.| |.|......|.       :
Zfish   134 TTRAQPDDY--TLFVRP-PVYLNDVIFQVVMEYTWQKFIIFYDTDYDIRGIENFLDQTSQQGMDV 195

  Fly   180 QLREVHNDV----------VRVRKFHKDDDFRVMWKSIRGERRVVLDCEPNMLVELLNSSTEFGL 234
            .|::|.:::          :||.:.|:..|..         ||.||...|......:....|..|
Zfish   196 SLQKVESNINMMITGMFRTMRVEELHRYRDTL---------RRAVLFMSPATAKAFITEVVETNL 251

  Fly   235 TGQYNHIFLTNLETYTDHLEELAADNETFAVNITAARLLVNPDPPPYSLPYGYVTQRDNIVYESS 299
            ........:.|.|.....::||...      :|....|:....|.|.:.....|.....|.....
Zfish   252 VAFDCQWIIINEEISDMDVQELVMK------SIGRLTLVRQTFPLPQNTSQRCVRNNHRINTSLC 310

  Fly   300 DP--PRTLIHDL----IHDALQLFAQSWRNASFFYPDRMVVPRITCDFAASGGRTWAMGRYLARL 358
            ||  |:..:.::    |:|.:.|.|.::...   ..||......:......|.:.|..|:.:...
Zfish   311 DPKDPKAQMLEITNRYIYDTVLLLANTFHRK---LEDRKWHSMASLSCIRKGSKPWQGGKSMLET 372

  Fly   359 MK--GTSGVNNTNFRTSILQFDEDGQRITFNIEV----YDPLDGIGI---AIWDPRGQITQLNVD 414
            :|  |.||:      ||:|:|:::|.....:.|:    |....|.|:   |.|||...:.....|
Zfish   373 VKKGGVSGL------TSLLEFNDNGSNPNIHFEILGTNYGEDRGRGVSRLATWDPIHGLNGTLTD 431

  Fly   415 VKAQKKM---IYRVATRIGPPYFSYNETARELNLTGN-ALYQGYAVDLIDAIARHVGFEYVFVPV 475
            .|.:..|   :.||.|.:..|:...:|     |:.|. ..|||:::|::||:|.::||:|.....
Zfish   432 RKLENNMRGVVLRVVTVLEEPFVMVSE-----NVLGKPKKYQGFSIDVLDALANYLGFKYEIYVA 491

  Fly   476 ADQQYGKLDKETKQWNGIIGEIINNDAHMGICDLTITQARKTAVDFTVPFMQLGVSILAYKSPHV 540
            .|.:||. .:....|||:|||::...|.:|:..||||..|::.||||..:|...|.:|..|:   
Zfish   492 PDHKYGS-QQADGTWNGLIGELVFKRADVGLSALTITPERESVVDFTTRYMDYSVGVLLRKA--- 552

  Fly   541 EKTLD--AYLAPFGGEVWIWILISVFVMTFLKTIVARISKMDWENPHPCNRDPEVLENQWRIHNT 603
            |:|:|  |.||||...:|..|..:|.::..|      :..::|.||   .|.|....:...::|:
Zfish   553 ERTVDMFACLAPFDLSLWACIAGTVLLVGTL------VYLLNWLNP---PRLPMGSVSSTTLYNS 608

  Fly   604 GWLTVASIMTAGCDILPRSPQVRMFEATWWIFAIIIANSYTANLAAFLTSSKMEGSIANLKDLSA 668
            .|....|.:..|.::...:...||....||:||:|:.:|||||||||||.|::|.||.:|:||:.
Zfish   609 MWFVYGSFVQQGGEVPYTTLATRMMMGVWWLFALIVISSYTANLAAFLTISRIENSIQSLQDLAK 673

  Fly   669 QKKVKFGTIYGGSTYNLLAD------SNETVYRLAFNLMNNDDPSA-YTKDNLEGVDRVRKNRGD 726
            |..:.:||:...:.|:.:..      ..:.:|...:.::|....:. ..:::.||:.:|:..|  
Zfish   674 QTDLPYGTVLDSAVYDQVRSKGMNPFERDPMYSQMWRMINRTGGAENNVEESKEGIRKVKYGR-- 736

  Fly   727 YMFLMETTTLEY--HREQNCDLRSVGEKFGEKHYAIAVPFGAEYRSNLSVAILKLSERGELYDLK 789
            :.|:.:...|||  ..:::|.|.:|.....::.|.:|:..|:.||...|..||:|.:.|::..||
Zfish   737 FAFVWDAAVLEYVAINDEDCSLYTVSNNVADRGYGMAMQHGSPYRDIFSQRILELQQNGDMDILK 801

  Fly   790 QKWWKNPNASCFEEPDPDAT----PDMTFEELRGIFYTLYAGILIAFLIGITEFLVYVQQVALEE 850
            .|||  |..|..:...|..|    ..:......|:|:.|.||::::.||...|            
Zfish   802 LKWW--PRDSPCDLYSPVGTRKSGSALDIHSFAGVFFVLAAGVVLSCLIATVE------------ 852

  Fly   851 RLTFKDAFKKEIRFVLCVWNNRKPIVAGTPISSVRTTPRRSLDKSLD 897
              |:              |..||    |:.:      |.:..||.:|
Zfish   853 --TW--------------WTRRK----GSRV------PSKEDDKEID 873

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIICNP_608557.4 PBP1_iGluR_Kainate 26..404 CDD:107377 87/422 (21%)
Periplasmic_Binding_Protein_Type_1 <279..363 CDD:299141 17/91 (19%)
PBP2_iGluR_Kainate 423..794 CDD:270432 118/382 (31%)
Lig_chan 554..828 CDD:278489 78/286 (27%)
grid2NP_001004123.1 PBP1_iGluR_delta_2 28..427 CDD:107386 89/428 (21%)
ANF_receptor 42..404 CDD:279440 78/391 (20%)
PBP2_iGluR_delta_2 440..806 CDD:270449 119/387 (31%)
Lig_chan 568..841 CDD:278489 77/285 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 989..1009
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591021
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.840

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