DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIC and GluRIB

DIOPT Version :9

Sequence 1:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster
Sequence 2:NP_001261621.2 Gene:GluRIB / 44484 FlyBaseID:FBgn0264000 Length:1182 Species:Drosophila melanogaster


Alignment Length:1018 Identity:241/1018 - (23%)
Similarity:421/1018 - (41%) Gaps:228/1018 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LLLGCMWSAF--FMCRSRG----------------QQINIGAFFYDDELELEKEFMTVVNAINGP 52
            |.|.|:|.:|  ::..|.|                ::|.:||.|.....|::..|...:...|..
  Fly     5 LKLSCLWPSFLLWLTWSSGGGGGSGVGVSAQPSLTEKIPLGAIFEQGTDEVQSAFKYAMLNHNLN 69

  Fly    53 ESEQTMRFYPLIKRLKPEDGSVTMQEHACDLIDNGVAAIFGPSSKAASDIVALVCNSTGIPHIEF 117
            .|.:.......:..:...| :..:....|:....||.::.|..|..:.|.:....|:..:|.:..
  Fly    70 VSSRRFELQAYVDVINTAD-AFKLSRLICNQFSRGVYSMLGAVSPDSFDTLHSYSNTFQMPFVTP 133

  Fly   118 DISDEGIQAEKPNHQMTLNLYP--AQAILSKAYADIVQNFGWRKFTIVYDADDARAAARLQDLLQ 180
            ...::.:..........|::.|  .|||:     |.:|.:||||...:||:.|  ...|||.:.|
  Fly   134 WFPEKVLTPSSGFLDFALSMRPDYHQAII-----DTIQFYGWRKIIYLYDSHD--GLLRLQQIYQ 191

  Fly   181 LREVHND------VVRVRKFHKDDDFRVMWKSI-RGE-RRVVLDCEPNMLVELLNSSTEFGLTGQ 237
            .....|:      |.|:.......:|....:.| |.| :.:||||...|..::|           
  Fly   192 GLRPGNESFQVELVKRISNVSMAIEFLHTLEQIGRFENKHIVLDCPTEMAKQIL----------- 245

  Fly   238 YNHIFLTNLETYTDH--LEELAADN-------ETFAVNITAARL------LVNPD-------PPP 280
            ..|:....|...|.|  |..|..|:       |..|:|||..|:      ||...       .|.
  Fly   246 IQHVRDLRLGRRTYHYLLSGLVMDDRWESEIIEFGAINITGFRIVDTNRRLVREFYDSWKRLDPQ 310

  Fly   281 YSLPYGYVTQRDNIVYESSDPPRTLIHDLIHDALQLFAQSWRNASFFYPDR-----------MVV 334
            .|:..|    |::|..:::         |::||:.:..:::.......||:           ::|
  Fly   311 MSVGAG----RESISAQAA---------LMYDAVFVLVEAFNKILRKKPDQFRNNVQRRSQTLMV 362

  Fly   335 PRITC-------DFAASGG------------------------------------RTWAMG---- 352
            .:...       :::||||                                    ..|..|    
  Fly   363 AQAAASTSSDGYNYSASGGGGGNGGAGGGFAGSDSGGSGGMASRALDCNTAKGWVNAWEHGDKIS 427

  Fly   353 RYLARL-MKGTSGVNNTNFRTSILQFDEDGQRITFNIEVYDPLDG---IGIAIWDPRGQITQLNV 413
            |||.:: ::|.:|         .::|::||:|:.:.:.|.:....   :.:|.|:....:..||.
  Fly   428 RYLRKVEIEGLTG---------DIKFNDDGRRVNYTLHVVEMTVNSAMVKVAEWNDDAGLQPLNA 483

  Fly   414 -------DVKAQKKMIYRVATRIGPPYFSYNETARELNLTGNALYQGYAVDLIDAIARHVGFEYV 471
                   .|:.:|...|.|.|.:..||....:.|....|.||..::||..||.|.:|:.:|..|.
  Fly   484 KYVRLRPHVEFEKNRTYIVTTVLEEPYIMLKQVAFGEKLHGNNRFEGYCKDLADLLAKELGINYE 548

  Fly   472 FVPVADQQYGKLDKETKQ--WNGIIGEIINNDAHMGICDLTITQARKTAVDFTVPFMQLGVSILA 534
            ...|.|..||. :|.:..  |:|::||::..:|.:.|..:|||..|:..:||:.|||.||:||:.
  Fly   549 LRLVKDGNYGS-EKSSAHGGWDGMVGELVRKEADIAIAAMTITAERERVIDFSKPFMSLGISIMI 612

  Fly   535 YKSPHVEKTLDAYLAPFGGEVWIWILISVFVMTFLKTIVARISKMDW----------ENPHP--- 586
            .|.......:.:::.|...|:|:.::.|...::.:...|:|.|..:|          ::|.|   
  Fly   613 KKPVKQTPGVFSFMNPLSQEIWVSVIFSYIGVSIVLFFVSRFSPHEWRLVQQQPQQSQSPDPHAH 677

  Fly   587 ----CNRDP--------------------------------------------EVLENQWRIHNT 603
                .|:.|                                            ..:.|::.:.|:
  Fly   678 HEQLANQQPPGIIGGAPLPAPPGPPTPGAQTAAGAAALQAALSAGSPGSGGSSSAVVNEFSVWNS 742

  Fly   604 GWLTVASIMTAGCDILPRSPQVRMFEATWWIFAIIIANSYTANLAAFLTSSKMEGSIANLKDLSA 668
            .|.::|:.|..|||:.|||...|:..|:|:.|.:|:.:|||||||||||..:|...|.:.:||:.
  Fly   743 FWFSLAAFMQQGCDLSPRSVSGRIAAASWFFFTLILISSYTANLAAFLTVERMVTPINSPEDLAM 807

  Fly   669 QKKVKFGTIYGGSTYNLLADSNETVYRLAFNLMNNDDPSAYTKDNLEGVDRVRKNRGDYMFLMET 733
            |.:|::||:..|||::....|...::...:..||: ....:.....||:.|||.::|.|..|:|:
  Fly   808 QTEVQYGTLLHGSTWDFFRRSQIGLHNKMWEYMNS-RKHVFVPTYDEGIKRVRNSKGKYALLVES 871

  Fly   734 TTLEY-HREQNCDLRSVGEKFGEKHYAIAVPFGAEYRSNLSVAILKLSERGELYDLKQKWWKNPN 797
            ...|| :..:.||...||.....|.:.||.|.|:..:..:::|:|.|.|.|||..|:.|||.. .
  Fly   872 PKNEYVNAREPCDTMKVGRNLDTKGFGIATPLGSALKDPINLAVLTLKENGELIKLRNKWWYE-K 935

  Fly   798 ASCFEEPDPDAT-PDMTFEELRGIFYTLYAGILIAFLIGITEF 839
            |.|....|.:.: .:::...:.||||.|..|:|::..:.|.|:
  Fly   936 AECSTHKDGETSHSELSLSNVAGIFYILIGGLLVSVFVAILEY 978

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIICNP_608557.4 PBP1_iGluR_Kainate 26..404 CDD:107377 91/471 (19%)
Periplasmic_Binding_Protein_Type_1 <279..363 CDD:299141 21/142 (15%)
PBP2_iGluR_Kainate 423..794 CDD:270432 125/434 (29%)
Lig_chan 554..828 CDD:278489 91/336 (27%)
GluRIBNP_001261621.2 PBP1_iGluR_AMPA 43..478 CDD:107375 91/475 (19%)
ANF_receptor 55..461 CDD:279440 85/446 (19%)
PBP2_iGluR_AMPA 497..938 CDD:270433 127/443 (29%)
Lig_chan 632..967 CDD:278489 91/336 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462511
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.940

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