DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIC and Ir93a

DIOPT Version :9

Sequence 1:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster
Sequence 2:NP_650924.3 Gene:Ir93a / 42471 FlyBaseID:FBgn0259215 Length:868 Species:Drosophila melanogaster


Alignment Length:929 Identity:177/929 - (19%)
Similarity:312/929 - (33%) Gaps:260/929 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 RGQQINIGAFFYDDELELEKEFMTVVNAINGPESEQTMRFYPLIKRLKPEDGSVTMQEHACDLI- 84
            |...||: .:|..:.:.|:|:|:.   ||...:.|.|..||.            ..||.:..|| 
  Fly    74 RNGGINV-KYFSWNAVRLKKDFLA---AITVTDCENTWNFYK------------NTQETSILLIA 122

  Fly    85 --DNGVAAIFGPSSKAASDIVALVCNSTGIPHIEFDISDEGIQAEKPNHQMTLNLYPAQAILSKA 147
              |:....:  |.::|.  :|.:|.|....|.:..|...:.|...|     |..::..|.||.: 
  Fly   123 ITDSDCPRL--PLNRAL--MVPIVENGDEFPQLILDAKVQQILNWK-----TAVVFVDQTILEE- 177

  Fly   148 YADIVQNFGWRKFT--------IVYDADDA------RAAARLQDLLQL-----REVHNDVVRVRK 193
            .|.:|::......|        |:|:.:|:      |.|.| |.|.|.     .|:....:.:..
  Fly   178 NALLVKSIVHESITNHITPISLILYEINDSLRGQQKRVALR-QALSQFAPKKHEEMRQQFLVISA 241

  Fly   194 FHKDDDFRVMWKSIRGERRVVLDCEPNMLVELLNSSTEFGLTGQYNHIFLTNL-------ETYTD 251
            ||:|                        ::|:..:...|.:..|: .||:.::       .|.|.
  Fly   242 FHED------------------------IIEIAETLNMFHVGNQW-MIFVLDMVARDFDAGTVTI 281

  Fly   252 HLEELA----ADNET-----FAVNITAARL---LVNPDPPPYSLPYGYVTQRDNIVYESSDPPRT 304
            :|:|.|    |.|||     .::|.|.:.:   |||        ....:|..:..:|..      
  Fly   282 NLDEGANIAFALNETDPNCQDSLNCTISEISLALVN--------AISKITVEEESIYGE------ 332

  Fly   305 LIHDLIHDALQLFAQSWRNASFFYPDRMVVPRITCDFAA----SGGRTWAMGRYLARLMKGTSGV 365
             |.|...:|::...|..:.....|....:.....|...|    ....||...:            
  Fly   333 -ISDEEWEAIRFTKQEKQAEILEYMKEFLKTNAKCSSCARWRVETAITWGKSQ------------ 384

  Fly   366 NNTNFRTSILQFDEDGQRITFNIEVYDPLDGIGIAIWDP-RGQITQ-------------LNVDVK 416
            .|..|| |..|.|...:...|          |.|..|.| .|.:.|             :.:|  
  Fly   385 ENRKFR-STPQRDAKNRNFEF----------INIGYWTPVLGFVCQELAFPHIEHHFRNITMD-- 436

  Fly   417 AQKKMIYRVATRIGPPYFSYNETARELNLTGNAL---YQGYAVDLIDAIARHVGFEYVFVPVADQ 478
                    :.|...||:       :.|....|.:   ::|..::::..::|.:.|.|..      
  Fly   437 --------ILTVHNPPW-------QILTKNSNGVIVEHKGIVMEIVKELSRALNFSYYL------ 480

  Fly   479 QYGKLDKETKQW---------------NGIIGE------------IINNDAHMGICDLTITQARK 516
                  .|...|               :.::|.            :..|...:.....|:....:
  Fly   481 ------HEASAWKEEDSLSTSAGGNESDELVGSMTFRIPYRVVEMVQGNQFFIAAVAATVEDPDQ 539

  Fly   517 TAVDFTVPFMQLGVSILAYKSPHVEKTLDAYLAPFGGEVWIWILISVFVMTFLKTIVARISKMDW 581
            ...::|.|......|.:..|...|.: :..:.|||..|.| :.|:.:.::| ..|:.|       
  Fly   540 KPFNYTQPISVQKYSFITRKPDEVSR-IYLFTAPFTVETW-FCLMGIILLT-APTLYA------- 594

  Fly   582 ENPHPCNRDPEVLENQ----WRIHNTGWLTVASIMTAGCDILPRSPQVRMFEATWWIFAIIIANS 642
                 .||...:.|.:    ..:.:..|....:::..|...||.:...|:....|||..|::..:
  Fly   595 -----INRLAPLKEMRIVGLSTVKSCFWYIFGALLQQGGMYLPTADSGRLVVGFWWIVVIVLVTT 654

  Fly   643 YTANLAAFLTSSKMEGSIANLKDLSAQKK-VKFGTIYGGSTYNLLADSNETVYRLAFNLMNNDDP 706
            |..||.||||..|.:..:..|..|...|. |::|.            .|.|.:.........:|.
  Fly   655 YCGNLVAFLTFPKFQPGVDYLNQLEDHKDIVQYGL------------RNGTFFERYVQSTTREDF 707

  Fly   707 SAY----------TKDNLEGVDRVRKNRGDYMF-LMETTTLEYHREQNCDLRSVGEKFGEKHYAI 760
            ..|          .::::|.|.|..:...|:.. |.......:.||:.|......|.|.::..|:
  Fly   708 KHYLERAKIYGSAQEEDIEAVKRGERINIDWRINLQLIVQRHFEREKECHFALGRESFVDEQIAM 772

  Fly   761 AVPFGAEYRSNLSVAILKLSERGELYDLKQKWWKNPNASCFEEPDPDATPDMT-----FEELRGI 820
            .||..:.|...::..|..:...|.:    ::|.:....|..:.....|...:|     .::::|.
  Fly   773 IVPAQSAYLHLVNRHIKSMFRMGFI----ERWHQMNLPSAGKCNGKSAQRQVTNHKVNMDDMQGC 833

  Fly   821 FYTLYAGILIAFLIGITEF 839
            |..|..|..:|.||...||
  Fly   834 FLVLLLGFTLALLIVCGEF 852

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIICNP_608557.4 PBP1_iGluR_Kainate 26..404 CDD:107377 85/422 (20%)
Periplasmic_Binding_Protein_Type_1 <279..363 CDD:299141 11/87 (13%)
PBP2_iGluR_Kainate 423..794 CDD:270432 74/416 (18%)
Lig_chan 554..828 CDD:278489 58/294 (20%)
Ir93aNP_650924.3 Periplasmic_Binding_Protein_Type_2 429..>697 CDD:328725 56/323 (17%)
Lig_chan 576..836 CDD:306551 57/289 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462613
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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