DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIC and gria4a

DIOPT Version :9

Sequence 1:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster
Sequence 2:NP_999971.1 Gene:gria4a / 407735 ZFINID:ZDB-GENE-020125-7 Length:898 Species:Danio rerio


Alignment Length:904 Identity:253/904 - (27%)
Similarity:418/904 - (46%) Gaps:96/904 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ILLLGCMW----SAFFMCRSRGQQINIGAFFYDDELELEKEFMTVVNAI----NGPE-SEQTMRF 60
            ::|:..:|    .||      ...:.||..|..:   .::|:.....||    ..|. :|.....
Zfish     4 LVLIPLLWGLGEGAF------PSSVQIGGLFIRN---TDQEYTAFRLAIFLHNTSPNATEAPFNL 59

  Fly    61 YPLIKRLKPEDGSVTMQEHACDLIDNGVAAIFGPSSKAASDIVALVCNSTGIPHIEFDISDEGIQ 125
            .|.:..::..: |..:....|.....||.||||...|.:...:...|::..|..:......||  
Zfish    60 VPHVDNIETAN-SFAVTNAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLVTPSFPAEG-- 121

  Fly   126 AEKPNHQMTLNLYPAQAILSKAYADIVQNFGWRKFTIVYDADDARAAARLQDLLQLREVHN---D 187
                ..|..|.|.|:   :..|...::.::.|.:|..:||.|  |..|.||.:::....:.   .
Zfish   122 ----ETQFVLQLRPS---IRGALLSLLDHYDWSRFVFLYDTD--RGYAVLQAIMEKAGQNGWQVS 177

  Fly   188 VVRVRKFHKDDDFRVMWKSI--RGERRVVLDCEPNMLVELLNSSTEFGLTGQYNHIFLTNLETYT 250
            .:.|..|: |..:|.:.:.:  |.|::.|:|.|...|..:|......|...:..|..:.||....
Zfish   178 AICVENFN-DASYRRLLEDLDRRQEKKFVIDLEAERLQNILEQIVSVGKHVKGYHYIVANLGFKD 241

  Fly   251 DHLEELAADNETFAVNITAARLLVNPDPPPYSL--PYGYVTQRDNIVYESSDPPRTLIHDLIHDA 313
            ..||.....    ..|:|..:|:....|....|  .:..:.||:   |..|:.|......|.:|.
Zfish   242 ISLERFMHG----GANVTGFQLVDFSKPMVIKLMQRWNKLDQRE---YPGSESPPRYTSSLTYDG 299

  Fly   314 LQLFAQSWRNASFFYPDRMVVPR--ITCDFAASGGRTWAMGRYLARLMKGT--SGVNNTNFRTSI 374
            :.:.|:::||   ....::.:.|  ...|..|:....|..|..:.|.:|..  .|:      |..
Zfish   300 VLVMAEAFRN---LRRQKIDISRRGNAGDCLANPAAPWNQGIDMERTLKQVRIQGL------TGN 355

  Fly   375 LQFDEDGQRITFNIEVYDPLDGIG---IAIWDPRGQITQLNVDV-----KAQKKMIYRVATRIGP 431
            :|||..|:|:.:.::|:: |...|   |..|:...::..:..::     .|.:.....|.|.:..
Zfish   356 IQFDHYGRRVNYTMDVFE-LKSNGPRKIGYWNDLDKLVLVQNELSMGNDSAMENRTVIVTTIMEG 419

  Fly   432 PYFSYNETARELNLTGNALYQGYAVDLIDAIARHVGFEYVFVPVADQQYGKLDKETKQWNGIIGE 496
            ||....:......  ||..::||.|||...:|:|:|.:|....|.|.:||..|.|||.|||::||
Zfish   420 PYVMLKKNWEMYE--GNEQFEGYCVDLASEVAKHIGIKYKISIVLDGKYGARDPETKIWNGMVGE 482

  Fly   497 IINNDAHMGICDLTITQARKTAVDFTVPFMQLGVSILAYKSPHVEKTLDAYLAPFGGEVWIWIL- 560
            ::...|.:.:..|.||..|:..:||:.|||.||:||:..|....:..:.::|.|...|:|:.|: 
Zfish   483 LVYGKAEIAVAPLAITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVF 547

  Fly   561 --ISVFVMTFLKTIVARISKMDW--ENPH------PCNRDPEVLENQWRIHNTGWLTVASIMTAG 615
              |.|.|:.||   |:|.|..:|  |.|.      |.::.|    |::.|.|:.|.::.:.|..|
Zfish   548 AYIGVSVVLFL---VSRFSPYEWHTEEPEEGSDGPPSDQPP----NEFGIFNSLWFSLGAFMQQG 605

  Fly   616 CDILPRSPQVRMFEATWWIFAIIIANSYTANLAAFLTSSKMEGSIANLKDLSAQKKVKFGTIYGG 680
            ||..|||...|:....||.|.:||.:|||||||||||..:|...|.:.:||:.|.::.:||:..|
Zfish   606 CDFTPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSG 670

  Fly   681 STYNLLADSNETVYRLAFNLMNNDDPSAYTKDNLEGVDRVRKNRGDYMFLMETTTLEYHREQN-C 744
            ||......|...||...::.|.:.:|:.:||...|||.||||::|.|.||:|:|..||..::. |
Zfish   671 STKEFFRRSKIAVYEKMWSYMKSAEPTVFTKTTAEGVARVRKSKGKYAFLLESTMNEYTEQRKPC 735

  Fly   745 DLRSVGEKFGEKHYAIAVPFGAEYRSNLSVAILKLSERGELYDLKQKWWKN-----PNASCFEEP 804
            |...||.....|.|.:|.|.|::..:.:::|:|||||.|.|..||.|||.:     |..|..::.
Zfish   736 DTMKVGGNLDSKGYGVATPKGSQLGTPVNLAVLKLSEAGVLDKLKNKWWYDKGECGPKDSGSKDK 800

  Fly   805 DPDATPDMTFEELRGIFYTLYAGILIAFLIGITEFLVYVQQVALEERLTFKDAFKKEIR 863
            ...|   ::...:.|:||.|..|:.:|.|:.:.||....:..|.:.:|||.:|.:.:.|
Zfish   801 SSQA---LSLSNVAGVFYILVGGLGLAMLVALVEFCYKSRAEAKKLKLTFSEAMRNKAR 856

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIICNP_608557.4 PBP1_iGluR_Kainate 26..404 CDD:107377 87/396 (22%)
Periplasmic_Binding_Protein_Type_1 <279..363 CDD:299141 18/89 (20%)
PBP2_iGluR_Kainate 423..794 CDD:270432 142/382 (37%)
Lig_chan 554..828 CDD:278489 105/290 (36%)
gria4aNP_999971.1 PBP1_iGluR_AMPA_GluR4 23..393 CDD:107383 87/402 (22%)
ANF_receptor 34..375 CDD:279440 80/370 (22%)
PBP2_iGluR_AMPA_GluR4 408..790 CDD:270445 143/390 (37%)
Lig_chan 540..821 CDD:278489 105/290 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591045
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.950

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