DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIC and gria1b

DIOPT Version :9

Sequence 1:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster
Sequence 2:NP_991293.1 Gene:gria1b / 403044 ZFINID:ZDB-GENE-020125-2 Length:917 Species:Danio rerio


Alignment Length:1018 Identity:273/1018 - (26%)
Similarity:423/1018 - (41%) Gaps:188/1018 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MWQRILLLGCMWSAFFMCRSRGQQINIGAFFYDDELELEKEFMTVVNAINGPESEQTMRFYPLIK 65
            |||..:||.........|.|....||||..|..|..|.: .|...::..|.            :.
Zfish     1 MWQSFVLLLTGLLGLCSCSSFPSNINIGGLFPTDSHEYD-VFRFALSQHND------------VP 52

  Fly    66 RLKPE------DGSVTMQEHACDLIDNGVAAIFGPSSKAASDIVALVCNSTGIPHIEFDISDEGI 124
            :|.|:      ..|..|....|.....||.||.|...:...:::...|   |..|:.|......|
Zfish    53 KLVPQVDMVDTGSSFAMTYAFCSQFSKGVYAIIGLYDRKTMNMLMSFC---GALHVCFVTPSFPI 114

  Fly   125 QAEKPNHQMTLNLYPAQAILSKAYADIVQNFGWRKFTIVYDADDARAAARLQDLL--------QL 181
            ..   |:|..:.|.|.   |..|...:|:::.|.||..:|.:|.....  ||.:|        |:
Zfish   115 DT---NNQFVIQLRPE---LQDALIALVEHYKWNKFVYMYSSDSGLTV--LQKILDTAAEKTWQV 171

  Fly   182 REVHNDVVRVRKFHKDDDFRVMWKSIRGERRVVLDCEPNMLVELLNSSTEFGLTGQYNHIFLTNL 246
            ..::.|.:....|.|    .:.....:.|.:::||||...|..:||.........:..|..|.||
Zfish   172 TSINFDTLTEAAFLK----AIQDLDNKKEFKIILDCELERLNSILNLIAAQKKNLKNYHYILANL 232

  Fly   247 ETYTDHLEELAADNETFAVNITAARLLVNPDPPPYSLPYGYVTQRDNIVYESSD---PPRTLIHD 308
            .....:|.|....    ..|:|..:|:      .|:.|....|.:|.:.::|.|   |.|.|.:.
Zfish   233 GFLDLNLTEFRKG----GANVTGFQLM------NYTNPTVSRTIQDWLEFDSKDLKSPKRRLKYT 287

  Fly   309 --LIHDALQLFAQSWRNASFFYPDRMVVPRITCDFAASGGR-------TWAMGRYLARLMKGTSG 364
              |.:|.:.:.|.:::|        :...||......:.|.       .|..|..:.|.::    
Zfish   288 GALTYDGVTVMATAFQN--------LRKQRIDISRRGNAGECLANPPAPWGQGIDIQRALQ---- 340

  Fly   365 VNNTNFR--TSILQFDEDGQRITFNIEV--YDPLDGIGIAIWDPRGQI-------TQLNVDVKAQ 418
              ...|.  |..:||::.|.|..|.:.|  :.|.....:..|:.|.:.       ..||.....|
Zfish   341 --QVQFEGLTGHVQFNDKGHRTNFTVSVMEFGPSGPKKVGYWNQREKYVSTATYSNMLNETFGLQ 403

  Fly   419 KKMIYRVATRIGPPYFSYNETARELNLTGNALYQGYAVDLIDAIARHVGFEYVFVPVADQQYGKL 483
            .: .|.|.|.:..||....:...:  |.||..|:||.|:|...||:|||:.|....|.|.:||..
Zfish   404 NR-TYVVTTILEAPYVMLKKNHEQ--LVGNDKYEGYCVELAAEIAKHVGYSYRLELVGDGKYGAR 465

  Fly   484 DKETKQWNGIIGEIINNDAHMGICDLTITQARKTAVDFTVPFMQLGVSILAYKSPHVEKTLDAYL 548
            |.||..|||::||::...|.:.:..||||..|:..:||:.|||.||:||:..|....:..:.::|
Zfish   466 DAETMMWNGMVGELVYGKADVAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPTKSKPGVFSFL 530

  Fly   549 APFGGEVWIWIL---ISVFVMTFLKTIVARISKMDWE-----------------NPHPCNRDPEV 593
            .|...|:|:.|:   |.|.|:.||   |:|.|..:|.                 :|.| |:.|..
Zfish   531 DPLAYEIWMCIVFAYIGVSVVLFL---VSRFSPYEWHADDEEETADQQNQNQPPSPEP-NQSPNQ 591

  Fly   594 LENQ--------------WRIHNTGWLTVASIMTAGCDILPRSPQVRMFEATWWIFAIIIANSYT 644
            .:||              :.|.|:.|.::.:.|..||||.|||...|:....||.|.:||.:|||
Zfish   592 SQNQREEKQEKQPEHTNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYT 656

  Fly   645 ANLAAFLTSSKMEGSIANLKDLSAQKKVKFGTIYGGSTYNLLADSNETVYRLAFNLMNNDDPSAY 709
            ||||||||..:|...|.:.:||:.|.::.:||:.||||......|...|:...::.|.:.:|:.:
Zfish   657 ANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDGGSTKEFFRRSKIAVFEKMWSYMKSAEPTVF 721

  Fly   710 TKDNLEGVDRVRKNRGDYMFLMETTTLEY-HREQNCDLRSVGEKFGEKHYAIAVPFGAEYRSNLS 773
            .|...|||.||||::|.|.:|:|:|..|| .:.:.||...||.....|.|.:|.|.|:..|:.::
Zfish   722 VKTTDEGVVRVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSALRNPVN 786

  Fly   774 VAILKLSERGELYDLKQKWWKNPNASCFE--EPDPDATPDMTFEELRGIFYTLYAGILIAFLIGI 836
            :|:|||:|:|.|..||.|||.: ...|..  ....|.|..::...:.|:||.|..|:.:|.|:.:
Zfish   787 LAVLKLNEQGLLDKLKNKWWYD-KGECGSGGGDSKDKTSALSLSNVAGVFYILIGGLGLAMLVAL 850

  Fly   837 TEFLVYVQQVALEERLTFKDAFKKEIRFVLCVWNNRKPIVAGTPISSVRTTPRRSLDKSLDRTPK 901
            .||                 .:|..|.                         .|.:.:.:|....
Zfish   851 VEF-----------------CYKSRIE-------------------------SRRMKQIIDAAML 873

  Fly   902 SSRRVVIGRSSEEMREMA------------QGSGSSSGSNNAG 932
            ||....:|...|..|.||            .|..::.|.:..|
Zfish   874 SSTLTRMGSGGENGRVMAHDFPKGAQTLPCMGQAAAMGLSTTG 916

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIICNP_608557.4 PBP1_iGluR_Kainate 26..404 CDD:107377 88/407 (22%)
Periplasmic_Binding_Protein_Type_1 <279..363 CDD:299141 19/95 (20%)
PBP2_iGluR_Kainate 423..794 CDD:270432 146/405 (36%)
Lig_chan 554..828 CDD:278489 105/310 (34%)
gria1bNP_991293.1 PBP1_iGluR_AMPA_GluR1 26..387 CDD:107385 89/412 (22%)
ANF_receptor 41..368 CDD:279440 80/377 (21%)
PBP2_iGluR_AMPA_GluR1 404..812 CDD:270447 147/415 (35%)
Lig_chan 536..842 CDD:278489 105/310 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591017
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.950

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