DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIC and Ir76a

DIOPT Version :9

Sequence 1:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster
Sequence 2:NP_001097647.3 Gene:Ir76a / 40157 FlyBaseID:FBgn0260874 Length:646 Species:Drosophila melanogaster


Alignment Length:585 Identity:103/585 - (17%)
Similarity:182/585 - (31%) Gaps:211/585 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   286 GYVTQRDNIVYESSDPPRTLIHDLIHDALQLFAQSWRNASFF--YPDRMVVPRITCDFAASGGRT 348
            ||:.|         |.|..|:          ....:.|:|.|  ..:|.|.||            
  Fly   149 GYIFQ---------DQPNILV----------ITSQYLNSSTFEIKTNRFVGPR------------ 182

  Fly   349 WAMGRYLARLMKGTSGVNNTNFRTS-------ILQ-FDEDGQRITFNIEVYDPLDGIGIAIWDPR 405
                                ||..:       ||| ||..|.:.|                |:.:
  Fly   183 --------------------NFNKNPEPVEFYILQRFDAKGTKAT----------------WETQ 211

  Fly   406 GQITQLNVDVKAQKKMI-------YRVATRIGPPYFSYNETARELNLTGNALYQGYAVDLIDAIA 463
            ..::....::|.::.:|       :.:.....||.: |:   |.:|.| :....|..:.|:    
  Fly   212 SAMSSKMRNLKGREVVIGIFDYKPFMLLDYEKPPLY-YD---RFMNTT-DVTIDGTDIQLM---- 267

  Fly   464 RHVGFEYVFVPVADQQYGKLDKETKQWN---------GIIGEIINNDAHMGICDLTITQARKTAV 519
                  .:|..:.:........|...|.         |::|.|::.....|:..:.:.......:
  Fly   268 ------LIFCELYNCTIQVDTSEPYDWGDIYLNASGYGLVGMILDRRNDYGVGGMYLWYEAYEYM 326

  Fly   520 DFTVPFMQLGVSILAYKSPHVEKTLDAYLAPFGGEVWIWILISVFVMTFLKTIVARISKMDWENP 584
            |.|....:.||:.|. .:|:...:....|.||...:|:.:::.:.:.:....|..|     ||: 
  Fly   327 DMTHFLGRSGVTCLV-PAPNRLISWTLLLRPFQFVLWMCVMLCLLLESLALGITRR-----WEH- 384

  Fly   585 HPCNRDPEVLENQWRIHNTGWLTVASIMTAGC------------DILPRSPQVRMFEATWWIFAI 637
                 ......|.|          .|.:..||            :.:..|..:|......::..|
  Fly   385 -----SSVAAGNSW----------ISSLRFGCISTLKLFVNQSTNYVTSSYALRTVLVASYMIDI 434

  Fly   638 IIANSYTANLAAFLTSSKMEGSIANLKDLSAQKKVKFGT-------------------------I 677
            |:...|:..|||.||...:|.:..:.:.|...|.:..||                         :
  Fly   435 ILTTVYSGGLAAILTLPTLEEAADSRQRLFDHKLIWTGTSQAWITTIDERSADPVLLGLMEHYRV 499

  Fly   678 YGGSTYNLLADSNET------VYRLAFNLMNNDDPSAYTKDNLEGVDRVRKNRGDYMFLMETT-- 734
            |..   ||::..:.|      |.||.|..:.|.:    ..:| :.:.|::....|..|.....  
  Fly   500 YDA---NLISAFSHTEQMGFVVERLQFGHLGNTE----LIEN-DALKRLKLMVDDIYFAFTVAFV 556

  Fly   735 -------------TLEYHREQNCDLRSVG-EKFGEKHYAIAVPFGAEYRSNLSVAILKLSERGEL 785
                         .|.:|        |.| :||.|  :.||..:...:|.|..||    ||:..|
  Fly   557 PRLWPHLNAYNDFILAWH--------SSGFDKFWE--WKIAAEYMNAHRQNRIVA----SEKTNL 607

  Fly   786  785
              Fly   608  607

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIICNP_608557.4 PBP1_iGluR_Kainate 26..404 CDD:107377 23/127 (18%)
Periplasmic_Binding_Protein_Type_1 <279..363 CDD:299141 13/78 (17%)
PBP2_iGluR_Kainate 423..794 CDD:270432 78/431 (18%)
Lig_chan 554..828 CDD:278489 54/291 (19%)
Ir76aNP_001097647.3 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462658
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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