DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIC and Ir75c

DIOPT Version :9

Sequence 1:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster
Sequence 2:NP_649013.3 Gene:Ir75c / 39983 FlyBaseID:FBgn0261401 Length:623 Species:Drosophila melanogaster


Alignment Length:731 Identity:130/731 - (17%)
Similarity:241/731 - (32%) Gaps:245/731 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   213 VVLDC----EPNMLVELLNSSTEFGLTGQY----NHIFLTNLETYTDHLE----------ELAAD 259
            :|..|    |...|||:||.:   |:..||    |...|.|:  :.::|:          :|..|
  Fly    23 MVFHCWSIKEAFPLVEMLNQN---GIFSQYIDVQNPDNLANV--HKEYLDSDLVRLGVFLDLGCD 82

  Fly   260 NETFAVNITAARLLVNPDPPPYSLPY---GYVTQ------------RDNIVYES-SDPPRTLIHD 308
            ......|.::...|.|.:  .:.|.|   |..|:            ..::.|.| .|..|.::||
  Fly    83 KAELVTNQSSRARLYNQN--LHWLLYDEAGNFTKLTQLFEGANLSLNADVTYVSREDEERFILHD 145

  Fly   309 LIHDALQLFAQSWRNASFFYPDRMVVPRITCDFAASGGRTWA-MGRYLARL-----MKGTSGVNN 367
            :.:....|..:.               .||.|......|:.. :..||:.|     ::....:::
  Fly   146 VYNKGSHLGGKL---------------NITVDQTLQCNRSHCQVKEYLSELHLRPRLQHRMDLSS 195

  Fly   368 TNFR----TSILQFDEDGQRITFNIEVYDPLDGIGIAIWDPRGQITQLNVDVKAQKKMIYRVATR 428
            ..||    .|:|..:...:.:                       :..||.|..:....|.|:..|
  Fly   196 VTFRLAALVSVLPINSSEEEL-----------------------LEFLNSDRDSHMDSISRIGNR 237

  Fly   429 IGPPYFSYNETARELNLTGNALYQGYAVDLIDAIARHVGFE--YVFVPVADQQYGKLDKETKQWN 491
                                         ||......:||:  |::......|        ..:.
  Fly   238 -----------------------------LIMHTQEILGFKLHYIWCGTWSVQ--------DAFG 265

  Fly   492 GIIGEIINNDAHMGICDLTITQARKTAVDFTVPFM----------------QLGVSILAYKSPHV 540
            |.||.:.|..|.  :|              |.||:                |.. ::..:::||.
  Fly   266 GAIGMLTNESAE--LC--------------TTPFVPSWNRLHYLHPMTEQAQFR-AVCMFRTPHN 313

  Fly   541 EKTLDA-YLAPFGGEVWI-WILISVFVMTFLKTIVARISKMDWENPHPCNRDPEVLENQW----- 598
            .....| :|.||...||. :..:.:|....|           |...|        ||..|     
  Fly   314 AGIKAAVFLEPFMPSVWFAFAGLLIFAGVLL-----------WMIFH--------LERHWMQRCL 359

  Fly   599 ----RIHNTGWLTVASIMTAGCDILPRSPQVRMFEATWWIFAIIIANSYTANLAAFLTSSKMEGS 659
                .:.::..::..:....|..::|:|...|:......:.:.::.|.||:.:.:.|..|.:..:
  Fly   360 DFIPSLLSSCLISFGAACIQGSYLMPKSAGGRLAFIAVMLTSFLMYNYYTSIVVSTLLGSPVRSN 424

  Fly   660 IANLKDLS-AQKKVKFGTIYGGSTYNLLADSNETVYRLAF--NLMNNDDPSAYTKDNLEGVDRVR 721
            |..::.|: :...|.|.|:....||  |..|.....|..:  .:.:..||::......|||.|||
  Fly   425 IRTIQQLADSSLDVGFDTVPFTKTY--LVSSPRPDIRSLYKQKVESKRDPNSVWLSPEEGVIRVR 487

  Fly   722 KNRGDYMFLMETTTLEYHREQNCDLRSVGEKFGEKHY-----------------AI--AVPFGAE 767
            ...| :::..|.:.: ||             |.||||                 |:  .|...:.
  Fly   488 DQPG-FVYTSEASFM-YH-------------FVEKHYLPREISDLNEIILRPESAVYGMVHLNST 537

  Fly   768 YRSNLSVAILKLSERGELYDLKQKWWKNPNASCFEEPDPDATPDMTFEELRGIFYT--LYAGILI 830
            ||..|:...:::.|.| :...:.:::.......|..         :|....|:.|.  |:..:|:
  Fly   538 YRQLLTQLQVRMLETG-ITSKQSRFFSKTKLHTFSN---------SFVIQVGMEYAAPLFISLLV 592

  Fly   831 AFLIGITEFLVYVQQV 846
            |:.:.:   |:.:.::
  Fly   593 AYFLAL---LILILEI 605

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIICNP_608557.4 PBP1_iGluR_Kainate 26..404 CDD:107377 42/234 (18%)
Periplasmic_Binding_Protein_Type_1 <279..363 CDD:299141 18/105 (17%)
PBP2_iGluR_Kainate 423..794 CDD:270432 76/421 (18%)
Lig_chan 554..828 CDD:278489 57/307 (19%)
Ir75cNP_649013.3 Lig_chan 328..553 CDD:306551 51/260 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462592
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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