DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIC and Ir68b

DIOPT Version :10

Sequence 1:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster
Sequence 2:NP_648548.1 Gene:Ir68b / 39378 FlyBaseID:FBgn0036250 Length:635 Species:Drosophila melanogaster


Alignment Length:446 Identity:86/446 - (19%)
Similarity:150/446 - (33%) Gaps:114/446 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   453 GYAVDLIDAIARHVGFE-------YVFVPVADQQYGKLDKETKQWNGIIGEIINNDAHMGICDLT 510
            ||  ..:|.:|..|..|       ||| |..::.||:. .....:.|::.:|:....|.......
  Fly   214 GY--QAVDGVAARVVGEMLNASVTYVF-PEDNESYGRC-LPNGNYTGVVSDIVGGHTHFAPNSRF 274

  Fly   511 ITQARKTAVDFTVPFMQLGVSILAYKSPHVEKTLDAYLAPFGGEVWIWILISVFVMTFLKTIVAR 575
            :......||:...|:.:..:.::...|. ::.....::..|...||..:|:::.|:..:..::.|
  Fly   275 VLDCIWPAVEVLYPYTRRNLHLVVPASA-IQPEYLIFVRVFRRTVWYLLLVTLLVVVLVFWVMQR 338

  Fly   576 ISKMDWENPHPCNRDP------------EVLENQWRIH---NTGWLTVASIMTAGCDILPRSPQV 625
            :.:          |.|            |:||...:.|   ..|.|:..|.|             
  Fly   339 LQR----------RIPRRGVIQFQATWYEILEMFGKTHVGEPAGRLSSFSSM------------- 380

  Fly   626 RMFEATWWIFAIIIANSYTANLAAFLTSSKMEGSIANLKDLSAQKKVKFGT-IYGGSTYNLLADS 689
            |.|...|.:|:.:::..|.|.|.:.......|..:..:.||     |.... ||..:|......|
  Fly   381 RTFLMGWILFSYVLSTIYFAKLESGFVRPSYEEQVDRVDDL-----VHLDVHIYAVTTMYDAVRS 440

  Fly   690 NETVYRLAFNLMNNDD---PSAYTKDNLEGVDRVRKNRGDYM--------FLMET---------- 733
            ..|.::  :.|:.|..   |........:.|.|.|..|..::        ||..|          
  Fly   441 ALTEHQ--YGLLENRSRQLPLGIATSYYQPVVRRRDRRAAFIMRDFHARDFLAITYDSQAERPAY 503

  Fly   734 -TTLEYHREQNCDLRSVGEKFGEKHYAIAVPFGAEYRSNLSVAILKLSERG-----ELYDLKQKW 792
             ...||.|...|              ...:|.|:.:...|........|.|     ...||..:.
  Fly   504 HIAREYLRSMIC--------------TYILPRGSPFLHRLESLYSGFLEHGFFEHWRQMDLITRV 554

  Fly   793 WKNPNASCF-----EEPDPDATPD----------MTFEELRGIFYTLYAGILIAFL 833
            ..:|:|..|     ::.|.|:..:          :|.:.|:|.||....||.|:.|
  Fly   555 GASPDAEEFLEDLGDQTDTDSGSNELAIRNKKVVLTLDILQGAFYLWSVGIGISCL 610

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIICNP_608557.4 Periplasmic_Binding_Protein_type1 26..409 CDD:471960
PBP2_iGluR_Kainate 423..794 CDD:270432 72/390 (18%)
Lig_chan 554..827 CDD:459656 62/330 (19%)
Ir68bNP_648548.1 None
Blue background indicates that the domain is not in the aligned region.

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