Protein Alignment GluRIIC and Ir68a

DIOPT Version :10

• Sequence 1: NP_608557.4
• Gene: GluRIIC / 33275
• FlyBaseID: FBgn0046113
• Length: 940
• Species: Drosophila melanogaster
• Sequence 2: NP_648455.2
• Gene: Ir68a / 39269
• FlyBaseID: FBgn0036150
• Length: 704
• Species: Drosophila melanogaster
• Alignment Length: 481
• Identity: 102/481 - (21%)
• Similarity: 183/481 - (38%)
• Gaps: 99/481 - (20%)

  Fly   445 LTGNAL--YQGYAVDLIDAIARHVGFEYVFVPV--------------ADQQYGKLDKETKQWNG- 492
            |..||.  :||..|::::|:.:.:.|:.|:...              |...||..:.:....||
  Fly   236 LWANATKSFQGVEVEIMNALGKALNFKPVYYKPNQTENMDWTELDGGASVAYGSGNPDGYAQNGT 300

  Fly   493 -----IIGEIINNDAHMGICDLTITQARKTAVDFTVPFMQLGVSILAYKSPH--VEKTLDAYLAP 550
                 ::.|:..:.|...|.||.:.|.....|:.:.|.   ....|.:.:|.  .:.:...::.|
  Fly   301 HIDSMLVDEVAAHSARFAIGDLHLFQVYLKLVELSAPH---NFECLTFLTPESSTDNSWQTFILP 362

  Fly   551 FGGEVWIWILISVFV-------MTFLKTIV-ARISKMDWENPHPCNR----DPEVLEN-QWRI-- 600
            |...:|:.:|:|:||       ::||..|: ..:|...:....| ||    ||::... .:||
  Fly   363 FSAGMWVGVLLSLFVVGTVFYAISFLNAIINGNVSSEFFRCLRP-NRNVPMDPKIYRRISFRIAI 426

  Fly   601 -------------------HNTGWLTVASIMTAGCDILPRSPQVRMFEATWWIFAIIIANSYTAN 646
                               .|...||.:.::......:||:..:|:....:||:.|::..:|.|:
  Fly   427 SRYRSSKGDRMPRDLFDGYTNCILLTYSMLLYVALPRMPRNWPLRVLTGWYWIYCILLVATYRAS 491

  Fly   647 LAAFLTSSKMEGSIANLKDLSAQKKVKFGTIYGGSTYN--LLADSNETVYRLAFNLMNNDDPSAY 709
            ..|.|.:.....:|..|:|| .:..:...|   |:|.|  ...::|:.|.|.....|   :...|
  Fly   492 FTAILANPAARVTIDTLEDL-LRSHIPPST---GATENRQFFLEANDEVARKVGEKM---EVFGY 549

  Fly   710 TKDNLEGVDRVRKNRGDYMFLMETTTLEYHR---EQNCDLRSVGEKFGEKHYAIAVPFGAEYRSN 771
            :.|.   ..|:.|  |...:......|.|.|   |....|..:.|........:|:...:..:..
  Fly   550 SDDL---TSRIAK--GQCAYYDNEFYLRYLRVADESGSALHIMKECVLYMPVVLAMEKNSALKPR 609

  Fly   772 LSVAILKLSERGELYDLKQKWWKNPNASCFEEPDPDATPDMTFEELRGI--FYTLYAGILIAFLI 834
            :..:|..|:|.|    |..||.|:    ..|....:|....  |.|..|  |::.:..:||.::|
  Fly   610 VDASIQHLAEGG----LIAKWLKD----AIEHLPAEALAQQ--EALMNIQKFWSSFVALLIGYVI 664

  Fly   835 GITEFLVYVQQVALEERLTFKDAFKK 860
            .:...|.        ||..||....|
  Fly   665 SMLTLLA--------ERWHFKHIVMK 682

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
GluRIIC	NP_608557.4	Periplasmic_Binding_Protein_type1	26..409	CDD:471960
		PBP2_iGluR_Kainate	423..794	CDD:270432	86/411 (21%)
		Lig_chan	554..827	CDD:459656	67/313 (21%)
Ir68a	NP_648455.2	Lig_chan	367..661	CDD:459656	68/316 (22%)