DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIC and Ir8a

DIOPT Version :9

Sequence 1:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster
Sequence 2:NP_727328.1 Gene:Ir8a / 31867 FlyBaseID:FBgn0052704 Length:936 Species:Drosophila melanogaster


Alignment Length:890 Identity:201/890 - (22%)
Similarity:352/890 - (39%) Gaps:220/890 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 KPEDGSVTMQEHACDLIDNGVAAIFGPSSKAASDIVAL----------VCNSTGIPHIE------ 116
            :.||| :.||.. |:::          |:..||.::.|          :..|.||.::.      
  Fly    63 RSEDG-LDMQRF-CEIL----------STVGASAVIDLTYSHWEEGYNLVRSLGIGYVRLERIMR 115

  Fly   117 --FDISDEGIQAEKPNH---------------QMTLNLYPAQA-ILSKAYADIVQNFGWRKFTI- 162
              .|:..:.::.::.|:               |..|..||.:. |:..:..|..|:|..|..:: 
  Fly   116 PFLDMFGDFMRQKRANNVAMVFMNARDAVEAMQQMLVGYPFRTLIMDASQTDPGQHFLERIRSLR 180

  Fly   163 ---VYDADDARAAA------RLQ--DLLQLREVHNDVV------RVRKFHKDDD----FRVMWKS 206
               .|.|..|||||      ::|  ||.| |.:....|      ||.|:.:..:    |.:..::
  Fly   181 PAPTYIALFARAAAMNGIFEKVQKADLFQ-RPLEWHFVFLDTRDRVFKYRRQAELCTRFTLNPRA 244

  Fly   207 IRGERRVVLDCEPNMLVELLNSSTEFGLTGQYNHIFLTNLETYTDHLEELAADNETFAVNITAAR 271
            |         |....:.:|...|   |.|.|  ...|.|:      |..|          |.||:
  Fly   245 I---------CRSMPMPDLYCGS---GFTMQ--RAMLLNV------LRSL----------INAAQ 279

  Fly   272 LLVNPDPPPYSLPYGYVTQRDNIVYESSDPPRTLIH------DLIHDALQLFAQSWRNASFFYPD 330
            :     .|.|.|.   :.|..|....||:....|..      |::|         |.|...:.|.
  Fly   280 V-----SPGYPLA---IYQDCNATASSSEVSDPLEKDDYNWLDMVH---------WSNFLAYAPP 327

  Fly   331 RMVVPRITCDFAAS-GGRTWAMGRYLARLMKGTSGVNNTNFRTSILQFDEDGQRITFNIEVYDPL 394
               :|.|...|.:. .|.|:|:                 |........:.:.:            
  Fly   328 ---LPHIQDQFQSPVPGLTFAV-----------------NISAGYYSSEHEAK------------ 360

  Fly   395 DGIGIAIWDPRGQITQLNVDVKAQKKMIYRVATRIGPP--YFSYNETAREL--NLTGNALYQGYA 455
              ..:|.|...|::..||..:...:: .:|:.|....|  |....|...||  :.:|..:::||.
  Fly   361 --TDLAAWSSVGEMRLLNETISPARR-FFRIGTAESIPWSYLRREEGTGELIRDRSGLPIWEGYC 422

  Fly   456 VDLIDAIARHVGFEYVFVPVADQQYGKLDKETKQWNGIIGEIINNDAHMGICDLTITQARKTAVD 520
            :|.|..:::.:.||:..|.......|:|: |..:|:|::|:::..:....|..|.:...|:..:|
  Fly   423 IDFIIRLSQKLNFEFEIVAPEVGHMGELN-ELGEWDGVVGDLVRGETDFAIAALKMYSEREEVID 486

  Fly   521 FTVPFM-QLGVSILAYKSPHVEKTLDAYLAPFGGEVWIWILISVFVMTFLKTIVARISKMDWEN- 583
            |..|:. |.|:|| |.:.|....:|..::.....|||:.|:.::.....:...:.:.|.....| 
  Fly   487 FLPPYYEQTGISI-AIRKPVRRTSLFKFMTVLRLEVWLSIVAALVGTAIMIWFMDKYSPYSSRNN 550

  Fly   584 ----PHPCNRDPEVLENQWRIHNTGWLTVASIMTAGCDILPRSPQVRMFEATWWIFAIIIANSYT 644
                |:.|        .::.:..:.|..:.|....|....|::...||..|.:|:|.:::..::|
  Fly   551 RQAYPYAC--------REFTLRESFWFALTSFTPQGGGEAPKAISGRMLVAAYWLFVVLMLATFT 607

  Fly   645 ANLAAFLTSSKMEGSIANLKDLSAQKKVKFGTIYGGSTYNLLAD---SNETVYR----LAFN--- 699
            ||||||||..:|:..:.:|:.|:.|.::.:..:....|:....:   :.:|:||    ||.|   
  Fly   608 ANLAAFLTVERMQTPVQSLEQLARQSRINYTVVKDSDTHQYFVNMKFAEDTLYRMWKELALNASK 672

  Fly   700 ---------------------LMNNDDPSAYTKDNLEGVDRVRKNRGDYMFLMETTTLEYHREQN 743
                                 .:|:..|.|..|:....||  .....||.|:.::..::|...:|
  Fly   673 DFKKFRIWDYPIKEQYGHILLAINSSQPVADAKEGFANVD--AHENADYAFIHDSAEIKYEITRN 735

  Fly   744 CDLRSVGEKFGEKHYAIAVPFGAEYRSNLSVAILKLSERGELYDLKQKWWKN---PNASCFEEPD 805
            |:|..|||.|.|:.||:||..|:.....||.|||:|.:.....:||.|:|..   ||....|:.:
  Fly   736 CNLTEVGEVFAEQPYAVAVQQGSHLGDELSYAILELQKDRFFEELKAKYWNQSNLPNCPLSEDQE 800

  Fly   806 PDATPDMTFEELRGIFYTLYAGILIAFLIGITEFLVY-VQQVALE 849
                 .:|.|.|.|:|.....|:::|.:....|.|.| .:|.|||
  Fly   801 -----GITLESLGGVFIATLFGLVLAMMTLGMEVLYYKKKQNALE 840

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIICNP_608557.4 PBP1_iGluR_Kainate 26..404 CDD:107377 77/398 (19%)
Periplasmic_Binding_Protein_Type_1 <279..363 CDD:299141 19/90 (21%)
PBP2_iGluR_Kainate 423..794 CDD:270432 103/411 (25%)
Lig_chan 554..828 CDD:278489 78/312 (25%)
Ir8aNP_727328.1 PBP2_iGluR_putative 383..786 CDD:270435 103/415 (25%)
Lig_chan 520..818 CDD:278489 78/312 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
44.010

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