Sequence 1: | NP_608557.4 | Gene: | GluRIIC / 33275 | FlyBaseID: | FBgn0046113 | Length: | 940 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001104587.1 | Gene: | Grik1 / 29559 | RGDID: | 2732 | Length: | 949 | Species: | Rattus norvegicus |
Alignment Length: | 928 | Identity: | 274/928 - (29%) |
---|---|---|---|
Similarity: | 458/928 - (49%) | Gaps: | 117/928 - (12%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MWQRILLLGCMWS-AFFMC----RSRGQQINIGAFFYDDELE----LEKEFMTVVNAINGPES-- 54
Fly 55 EQTMRFYPLIKRLKPEDGSVTMQEHACDLIDNGVAAIFGPSSKAASDIVALVCNSTGIPHIEFDI 119
Fly 120 SDEGIQAEKPNHQMTLNLYPAQAILSKAYADIVQNFGWRKFTIVYDADDARAAARLQDLLQLREV 184
Fly 185 HNDVVRVRKF-HKDDDFRVMWKSIRGERR--VVLDCEPNMLVELLNSSTEFGLTGQYNHIFLTNL 246
Fly 247 ETYTDHLEELAADNETF---AVNITAARLLVNPDPPPYSLPYGYVTQRDNIVYESS-----DPPR 303
Fly 304 ----------TLIHDLIHDALQLFAQSWRNASFFYPDRMVVPRITCDFAASGGRTWAMGRYLARL 358
Fly 359 MK-----GTSG---VNNT-----NFRTSILQFDEDG-QRITFNI--EVYDPLDGIGIAIWDPRGQ 407
Fly 408 ITQLN---------VDVKAQKKMIYRVATRIGPPYFSYNETARELNLTGNALYQGYAVDLIDAIA 463
Fly 464 RHVGFEYVFVPVADQQYGKLDKETKQWNGIIGEIINNDAHMGICDLTITQARKTAVDFTVPFMQL 528
Fly 529 GVSILAYKSPH-VEKTLDAYLAPFGGEVWIWILISVFVMTFLKTIVARISKMDWENPHPCNRDPE 592
Fly 593 VLENQWRIHNTGWLTVASIMTAGCDILPRSPQVRMFEATWWIFAIIIANSYTANLAAFLTSSKME 657
Fly 658 GSIANLKDLSAQKKVKFGTIYGGSTYNLLADSNETVYRLAFNLMNNDDPSAYTKDNLEGVDRVRK 722
Fly 723 NRGDYMFLMETTTLEYHREQNCDLRSVGEKFGEKHYAIAVPFGAEYRSNLSVAILKLSERGELYD 787
Fly 788 LKQKWWKNPNASCFEEPDPDATPDMTFEELRGIFYTLYAGILIAFLIGITEFLVY------VQQV 846
Fly 847 ALEERLTFKDAFKKEIRF 864 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
GluRIIC | NP_608557.4 | PBP1_iGluR_Kainate | 26..404 | CDD:107377 | 110/420 (26%) |
Periplasmic_Binding_Protein_Type_1 | <279..363 | CDD:299141 | 21/103 (20%) | ||
PBP2_iGluR_Kainate | 423..794 | CDD:270432 | 131/371 (35%) | ||
Lig_chan | 554..828 | CDD:278489 | 98/273 (36%) | ||
Grik1 | NP_001104587.1 | Periplasmic_Binding_Protein_Type_1 | 35..430 | CDD:299141 | 111/430 (26%) |
ANF_receptor | 53..396 | CDD:279440 | 98/376 (26%) | ||
Periplasmic_Binding_Protein_Type_2 | 446..815 | CDD:304360 | 132/376 (35%) | ||
Glutamate binding | 531..533 | 0/1 (0%) | |||
Lig_chan | 577..846 | CDD:278489 | 98/273 (36%) |