DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIC and glr-5

DIOPT Version :9

Sequence 1:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster
Sequence 2:NP_505244.1 Gene:glr-5 / 179251 WormBaseID:WBGene00001616 Length:932 Species:Caenorhabditis elegans


Alignment Length:905 Identity:240/905 - (26%)
Similarity:413/905 - (45%) Gaps:142/905 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 ELELEKEFMTVVNAINGPESEQTMRFYPLIKRLKPEDGSVTMQEHACDLID-NGVAAIFGPSSKA 98
            :::|..|::.|::            .|..||:             ||.::: :.:.|:.|.|..|
 Worm    58 DIDLVIEYIDVLD------------HYDAIKK-------------ACKMLEKDHIVALLGGSHAA 97

  Fly    99 ASDIVALVCNSTGIPHIEF--DI-SDEGIQAEKPNHQMTLNLYPAQAILSKAYADIVQNFGWRKF 160
            .:..:..:.:...||.:..  |: :|.|        :..::.:| :..|.:|..|:..::.|.:.
 Worm    98 LNAQLERITDDLDIPFLTAIDDLRTDMG--------KSKIDFWP-RPQLFEAVVDMFTHWRWNRI 153

  Fly   161 TIVYDADDARAAARLQDLLQLRE----------VHN-DVVRVRKFHKD-DDFRVMWKSIRGE-RR 212
            .:||:.|:  ...||:.||:..|          ||: |.::..:..|: ::.|::.|....| .|
 Worm   154 VLVYEGDE--RIRRLEQLLESEEYASIRFYLIKVHDGDYMKAARQVKELEECRLLHKKDCSEFSR 216

  Fly   213 VVLDCEPNMLVELLNSSTEFGLTGQYNHIFLTNLETYTDHLEELAADNETFAVN---------IT 268
            :::|..|......|.:|.:.||....:...|||:|..|       .|.|.|..|         :.
 Worm   217 LLVDMNPEHTYTFLLASLQMGLIELKHWFLLTNMELST-------MDMELFRYNHARFISPYPVD 274

  Fly   269 AARLLVNPDPPPYSLPYGYVTQRDNIVYESSDPPRTLIHDLIHDALQLFAQSWRNASFFYPDRMV 333
            :..|..|.|...:|....::|::..:..::|...:.:......||:..||..:...| .:.....
 Worm   275 STFLTENRDAFNFSHFKEHITEKWAMKTDNSRNLKMMEAVFTFDAVYAFANVFNELS-SHMQMND 338

  Fly   334 VPRITCDFAASGGRTWAMGRYL---------------ARLMKGTSGVNNTNFRTSILQFDEDGQR 383
            ||:..|..::...|.:..||.|               .|.:.|....:|.:.|..:|.:  .|: 
 Worm   339 VPQTLCRKSSRNSRKYQHGRSLIDNIVHNDLHGLSGDLRRLNGHPLKSNFSMRIQLLGY--SGR- 400

  Fly   384 ITFNIEVYDPLDGIGIAIWDPRGQI-----------TQLNVDVKAQKKMIYRVATRIGPPYFSYN 437
                      ||.||  .|:|...:           .|.||.|..:.|..:||.|.:..||....
 Worm   401 ----------LDDIG--FWEPATNVHVNMS
GDSKAQLQRNVQVSDELKPHFRVTTIMERPYVMLK 453

  Fly   438 ETARELNLTGNALYQGYAVDLIDAIARHVGFEYVFVPVADQQYGKLDKETKQWNGIIGEIINNDA 502
            :...||:  .|:.::|:.:||:..:::.:||.|....|.|.:||........|:|::|||:..:|
 Worm   454 KNHYELD--ANSKFEGFCIDLLAELSKDLGFTYTIHAVKDGKYGNDKYGNGSWDGMMGEILRGEA 516

  Fly   503 HMGICDLTITQARKTAVDFTVPFMQLGVSILAYKSPHVEK-TLDAYLAPFGGEVWIWILISVFVM 566
            .|.:..||:...|..|||||.||:.||:||| ||.|..:: .|.::|.|...::|..|..|:..:
 Worm   517 EMAVAPLTVNYRRSEAVDFTKPFLSLGISIL-YKVPDDQQPDLFSFLNPLSWQIWTAIATSIITV 580

  Fly   567 TFLKTIVARISKMDW---------ENPHPC-----NRD-PEVLENQWRIHNTGWLTVASIMTAGC 616
            |.....||.::..:|         ..|||.     |:: |.|:.|.:...||.|..:::::..||
 Worm   581 TLGMYFVANVTPYEWNLNFSCCTAHEPHPAAAFATNQEAPIVMSNNYSFWNTVWYVLSTMLKGGC 645

  Fly   617 DILPRSPQVRMFEATWWIFAIIIANSYTANLAAFLTSSKMEGSIANLKDLSAQKKVKFGTIYGGS 681
            |..||:...|:...|||:|.::|.::|||||||.||.|:....|.||.||:.|..:.:|||.|||
 Worm   646 DFGPRAVSTRLLGGTWWVFYLVIISAYTANLAAVLTVSRPYIPIKNLDDLANQTTISYGTIRGGS 710

  Fly   682 TYNLLADSNETVYRLAFNLMNNDDPSAYTKDNLEGVDRVRKNRGDYMFLMETTTLEYHREQNCDL 746
            |.....:|....:...:..|.:.|  .:...|.:||:|....  :|.:|||:|:|||..:|||:|
 Worm   711 TMQFFQESRIAAHVKMWQYMKDKD--VFVTSNGKGVERALSM--NYAYLMESTSLEYETQQNCNL 771

  Fly   747 RSVGEKFGEKHYAIAVPFGAEYRSNLSVAILKLSERGELYDLKQKWWKNPNASCFE-----EPDP 806
            ..:|...|.|.|.||:...:|:...:|..||..::||.:...|.|||::..|:|..     :.|.
 Worm   772 TQIGGVLGSKGYGIALAKKSEWTDRISRQILLYAKRGIIEMKKTKWWRSKGAACASTASAVKHDR 836

  Fly   807 DATPDMTFEELRGIFYTLYAGILIAFLIGITEFLVYVQQVALEERLTFKDAFKKEIRFVL 866
            .|   ::...:.|:|.||..||::|.::.|.|.:.....:|.:|...|.:....|:||.|
 Worm   837 FA---LSMYNVAGLFITLGVGIVLAAIVVIFELIHRCHHIAKKEGKPFLEELLYELRFAL 893

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIICNP_608557.4 PBP1_iGluR_Kainate 26..404 CDD:107377 82/409 (20%)
Periplasmic_Binding_Protein_Type_1 <279..363 CDD:299141 17/98 (17%)
PBP2_iGluR_Kainate 423..794 CDD:270432 131/386 (34%)
Lig_chan 554..828 CDD:278489 94/293 (32%)
glr-5NP_505244.1 PBP1_iGluR_delta_like 26..418 CDD:107376 83/418 (20%)
ANF_receptor 38..377 CDD:279440 71/362 (20%)
PBP2_iGluR_Kainate 438..819 CDD:270432 131/387 (34%)
Lig_chan 568..855 CDD:278489 94/293 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.020

Return to query results.
Submit another query.