DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIC and Grin3b

DIOPT Version :9

Sequence 1:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster
Sequence 2:XP_006513350.1 Gene:Grin3b / 170483 MGIID:2150393 Length:1138 Species:Mus musculus


Alignment Length:1062 Identity:237/1062 - (22%)
Similarity:391/1062 - (36%) Gaps:276/1062 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 TVVNAINGPESEQTMRFYPLIKRLKPEDGSVTMQEH--ACDLIDNGVAAIFGPSSKAAS------ 100
            |||.:| |.|..||:.   |...|....||..::.|  .|     ||....|.|.:.|:      
Mouse    74 TVVTSI-GMECVQTLW---LSLALALARGSWVVRGHPQPC-----GVPTRAGASVRLAALLPRAP 129

  Fly   101 -----DIVALVCNSTGIPHIEFDISDEGIQAEKPNHQMTLNLYPAQAILSKAYADIVQNFGWRKF 160
                 .:.||...|..:||   ::|.|.:....|...      ||.  |::....::...|    
Mouse   130 AARARVLAALATPSPRLPH---NLSLELVAVASPTRD------PAS--LARGLCQVLAPPG---- 179

  Fly   161 TIVYDA--DDARAAARLQDLLQL-----------REVHNDVVRVRKFHKDDDFRVMWKSIRGERR 212
             :|...  .:||...||...|..           |||...:.....||...|    |.|   ...
Mouse   180 -VVASITFPEARPELRLLQFLAAATETPVLSVLRREVRAPLGAPTPFHLQLD----WAS---PLE 236

  Fly   213 VVLD------------------C---EPNMLVELLNS----STEFGLTGQYNHIFLTNLETYTDH 252
            .:||                  |   :|:.||.|..|    :.:|.|.       |:.|::..|.
Mouse   237 TILDVLVSLVRAHAWEDIALVLCRVRDPSGLVTLWTSRASQAPKFVLD-------LSQLDSGNDS 294

  Fly   253 LE---ELAADNETFAVNITAARLL-------------VNPDP-------------PPYSLPYGYV 288
            |.   .|....|.....::||.||             ..|.|             |...||.|.:
Mouse   295 LRATLALLGTLEGGGTPVSAAVLLGCSTAHAHEVLEAAPPGPQWLLGTPLPAEALPKTGLPPGVL 359

  Fly   289 TQRDNIVYESSDPPRTLIHDLIHDALQLFAQSWRNASFFYPDRMVVP-RITCDFAASGGRTWAMG 352
                 ::.|:..|.   :...:||.::|.|::..:.:..:|:|.::| .:.|:...:|| :.:..
Mouse   360 -----VLGETGQPS---LEAAVHDMVELVARALSSMALMHPERALLPAAVNCEDLKTGG-SESTA 415

  Fly   353 RYLARLMKGTSGVNNTNF--RTSILQFDEDGQ-RITFNIEVY----DPLDGIGIAIWDPRG--QI 408
            |.|||.:      :||:|  ||..:......| .::.:.:|:    |||   |...|...|  |.
Mouse   416 RTLARFL------SNTSFQGRTGAVWVAGSSQVHVSRHFKVWSLRRDPL---GAPAWATVGSWQD 471

  Fly   409 TQLNVD-------------VKAQKKMIYRVATRIGPPYF--------------------SYNETA 440
            .||:..             .:|:.|:  ||.|.:..|:.                    ..|::|
Mouse   472 GQLDFQPGAAALRVPSPSGTQARPKL--RVVTLVEHPFVFTRESDEDGQCPAGQLCLDPGTNDSA 534

  Fly   441 RELNLTGNALYQ------------GYAVDLIDAIARHVGFEYVFVPVADQQYGKLDKETKQWNGI 493
            | |:....||..            ||.:||::.:|..:.|::....|.|.:||.|  ...:|.|:
Mouse   535 R-LDALFTALENGSVPRTLRRCCYGYCIDLLERLAEDLAFDFELYIVGDGKYGAL--RDGRWTGL 596

  Fly   494 IGEIINNDAHMGICDLTITQARKTAVDFTVPFMQLGVSILAYKSPHVEKTLDAYLAPFGGEVWIW 558
            :|:::...|||.:...:|..||...||||.||....:.|:. ::......:.|::.|....:|:.
Mouse   597 VGDLLAGRAHMAVTSFSINSARSQVVDFTSPFFSTSLGIMV-RTRDTASPIGAFMWPLHWSMWVG 660

  Fly   559 ILISVFVMTFLKTIVARISKMDWENPH---PCNRDPEVLENQWRIHNTGWLTVASIMTA------ 614
            :..::.:.....|:      .:|.:|:   |..|            |.|  ||.|..:|      
Mouse   661 VFAALHLTALFLTL------YEWRSPYGLTPRGR------------NRG--TVFSYSSALNLCYA 705

  Fly   615 ---GCDI---LPRSPQVRMFEATWWIFAIIIANSYTANLAAFLTSSKMEGSIANLKDLS---AQK 670
               |..:   .|:.|..|.....|.||.:::.:||||||||.:...|....::.:.|..   ..:
Mouse   706 ILFGRTVSSKTPKCPTGRFLMNLWAIFCLLVLSSYTANLAAVMVGDKTFEELSGIHDPKLHHPSQ 770

  Fly   671 KVKFGTIYGGSTYNLLADSNETVYRLAFNLMNNDDPSAYTKDNLEGV-----DRVRKNRGDYMFL 730
            ..:|||::..|.        |...:.:|..|:.............||     |..:.|    .|:
Mouse   771 GFRFGTVWESSA--------EAYIKASFPEMHAHMRRHSAPTTPHGVAMLTSDPPKLN----AFI 823

  Fly   731 METTTLEYH--REQNCDLRSVGEKFGEKHYAIAVPFGAEYRSNLSVAILKLSERGELYDLKQKWW 793
            |:.:.|:|.  .:.:|.|.:||:.|..:.|.|.:|..:...||||..|.:....|.:..|..||:
Mouse   824 MDKSLLDYEVSIDADCKLLTVGKPFAIEGYGIGLPQNSPLTSNLSEFISRYKSSGFIDLLHDKWY 888

  Fly   794 KNPNASC----FEEPDPDATPDMTFEELRGIFYTLYAGILIAFLIGITEFLVYVQQVALEERLTF 854
            |  ...|    |...:   |..|....|.|:|..|..|:..|.|..:.|.:.|        ||..
Mouse   889 K--MVPCGKRVFAVTE---TLQMGVYHLSGLFVLLCLGLGSALLTSLGEHVFY--------RLVL 940

  Fly   855 KDAFK-KEIRFVLCVWNNRKPIVAGTPISSVRTTPRRSLDKSLDRTPKSSRRVVIGRSSEEMR-- 916
            ....: .::::.|.....|:....|.....:|:.|:. |...|:..|....|...|.:.|...  
Mouse   941 PRIRRGNKLQYWLHTSQVRRQDKVGRGGGHLRSLPKH-LSVPLEDPPSPQHRATRGATGEGRAGV 1004

  Fly   917 EMAQGSGSSSGSNNAGRGEKEA 938
            ::..|.|.:..|...|...::|
Mouse  1005 QVTTGRGGAGQSGVPGLASRQA 1026

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIICNP_608557.4 PBP1_iGluR_Kainate 26..404 CDD:107377 99/447 (22%)
Periplasmic_Binding_Protein_Type_1 <279..363 CDD:299141 20/84 (24%)
PBP2_iGluR_Kainate 423..794 CDD:270432 100/427 (23%)
Lig_chan 554..828 CDD:278489 70/302 (23%)
Grin3bXP_006513350.1 PBP1_iGluR_NMDA_NR3 141..481 CDD:380600 82/387 (21%)
PBP2_iGluR_NMDA_Nr3 494..888 CDD:270438 100/431 (23%)
Lig_chan 656..922 CDD:365843 70/302 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846270
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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