DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIC and gria3a

DIOPT Version :9

Sequence 1:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster
Sequence 2:XP_005165152.1 Gene:gria3a / 170452 ZFINID:ZDB-GENE-020125-5 Length:903 Species:Danio rerio


Alignment Length:824 Identity:251/824 - (30%)
Similarity:384/824 - (46%) Gaps:112/824 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 QINIGAFFYDDELELEKEFMTVVNAINGPE--SEQTMRFYPLIKRLKPEDG-SVTMQEHA-CDLI 84
            |||||..|....::....|...|...|..:  :|:.......:..|:..:. |||   || |...
Zfish    26 QINIGGLFMRSTVQEHSAFRFAVQLYNTNQNITEKPFHLNYNVDNLESSNSFSVT---HAFCSQF 87

  Fly    85 DNGVAAIFGPSSKAASDIVALVCNSTGIPHIEFDISDEGIQAEKPNH---QMTLNLYPAQAILSK 146
            ..||.||||...:.:.:.:...|   |..|..|      |....|..   |..|.:.|:   |..
Zfish    88 SRGVYAIFGFYDRRSMNTLTSFC---GALHTSF------ITPSFPTDTDVQFVLQMRPS---LRG 140

  Fly   147 AYADIVQNFGWRKFTIVYDAD--------------------DARAAARLQDLLQLREVHNDVVRV 191
            |...::.::.|.||..:||.|                    .||:...:.|.|:.|.:..::.| 
Zfish   141 ALLSLLAHYKWEKFVYLYDTDRGFSILQAIMESAVMNNWQVTARSVGNIVDPLEYRRIIEEMDR- 204

  Fly   192 RKFHKDDDFRVMWKSIRGERRVVLDCEPNMLVELLNSSTE----FGLTGQYNHIFLTNLETYTDH 252
                            |.|:|.::|||    ||.:||..|    .|...:..|..|.||......
Zfish   205 ----------------RQEKRFLIDCE----VERINSILEQVVIAGKNSRGYHYILANLGFTNMS 249

  Fly   253 LEELAADNETFAVNITAARLLVNPDPP---PYSLPYGYVTQRDNIVYESSDPPRTLIHDLIHDAL 314
            |:::.:.    ..|||..: ::|||.|   .:...:..:.:|:  ..||...|......|.|||:
Zfish   250 LDKVFSG----GANITGFQ-IINPDSPIVQQFLQRWERLDERE--FPESRSSPLKYTSALTHDAI 307

  Fly   315 QLFAQSWRNASFFYPDRMVVPR--ITCDFAASGGRTWAMGRYLARLMKGTSGVNNTNFRTSILQF 377
            .:.|:::|   :....|:.:.|  ...|..|:....|:.|..:.|.:|    :......|..:||
Zfish   308 LVIAEAFR---YLRRQRVDISRRGSAGDCLANPAVPWSQGIDIERALK----MVQVQGMTGNIQF 365

  Fly   378 DEDGQRITFNIEVYD--PLDGIGIAIWDP--------RGQITQLNVDVKAQKKMIYRVATRIGPP 432
            |..|:|..:.::||:  |.....|..|:.        ..|:|  |.....:.:.|. |.|.:..|
Zfish   366 DSFGRRSNYTVDVYEMKPGGARKIGYWNEFEKFVYIVEQQVT--NESSSVENRTIV-VTTIMEAP 427

  Fly   433 YFSYNETARELNLTGNALYQGYAVDLIDAIARHVGFEYVFVPVADQQYGKLDKETKQWNGIIGEI 497
            |..|..  ..:.|.||..|:||.|||...||:|||.:|....|||.:||..|.|||.|||::||:
Zfish   428 YVMYKR--NYMQLEGNDRYEGYCVDLASEIAKHVGIKYKLSIVADGKYGARDPETKTWNGMVGEL 490

  Fly   498 INNDAHMGICDLTITQARKTAVDFTVPFMQLGVSILAYKSPHVEKTLDAYLAPFGGEVWIWIL-- 560
            :...|.:.:..||||..|:..:||:.|||.||:||:..|....:..:.::|.|...|:|:.|:  
Zfish   491 VYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFA 555

  Fly   561 -ISVFVMTFLKTIVARISKMDWE-NPHPCNRDPEV---LENQWRIHNTGWLTVASIMTAGCDILP 620
             |.|.|:.||   |:|.|..:|. :.:...:||:.   ..|.:.|.|:.|.::.:.|..||||.|
Zfish   556 YIGVSVVLFL---VSRFSPYEWHLDDNEETKDPQTPPDPPNDFGIFNSLWFSLGAFMQQGCDISP 617

  Fly   621 RSPQVRMFEATWWIFAIIIANSYTANLAAFLTSSKMEGSIANLKDLSAQKKVKFGTIYGGSTYNL 685
            ||...|:....||.|.:||.:|||||||||||..:|...|.:.:||:.|.::.:||:..|||...
Zfish   618 RSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTKEF 682

  Fly   686 LADSNETVYRLAFNLMNNDDPSAYTKDNLEGVDRVRKNRGDYMFLMETTTLEY-HREQNCDLRSV 749
            ...|...||...::.|.:.:||.:.|...:||.||||::|.:.||:|:|..|| .:.:.||...|
Zfish   683 FRRSKIAVYEKMWSYMKSAEPSVFVKTTPDGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKV 747

  Fly   750 GEKFGEKHYAIAVPFGAEYRSNLSVAILKLSERGELYDLKQKWW 793
            |.....|.|.:|.|.|:..|:.:::|:|||||:|.|..||.|||
Zfish   748 GGNLDSKGYGVATPKGSALRTPVNLAVLKLSEQGILDKLKNKWW 791

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIICNP_608557.4 PBP1_iGluR_Kainate 26..404 CDD:107377 97/415 (23%)
Periplasmic_Binding_Protein_Type_1 <279..363 CDD:299141 19/88 (22%)
PBP2_iGluR_Kainate 423..794 CDD:270432 148/379 (39%)
Lig_chan 554..828 CDD:278489 96/248 (39%)
gria3aXP_005165152.1 PBP1_iGluR_AMPA_GluR3 28..399 CDD:107382 97/420 (23%)
ANF_receptor 39..382 CDD:279440 90/392 (23%)
PBP2_iGluR_AMPA 415..797 CDD:270433 149/383 (39%)
Lig_chan 547..810 CDD:278489 96/248 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591101
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.950

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