DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIC and Grik3

DIOPT Version :9

Sequence 1:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster
Sequence 2:NP_001074566.1 Gene:Grik3 / 14807 MGIID:95816 Length:919 Species:Mus musculus


Alignment Length:923 Identity:285/923 - (30%)
Similarity:464/923 - (50%) Gaps:115/923 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 WQRI-LLLGCMWSAFFMCR-----SRGQQ--INIGAFF-YDDELEL------EKEFMTVVNAING 51
            |:|: .|:...|:.|.:|.     |||..  |.||..| |.|....      |..|....|.||.
Mouse     5 WRRLRSLVWEYWAGFLVCAFWIPDSRGMPHVIRIGGIFEYADGPNAQVMNAEEHAFRFSANIINR 69

  Fly    52 PES--EQTMRFYPLIKRLKPEDGSVTMQEHACDLIDNGVAAIFGPSSKAASDIVALVCNSTGIPH 114
            ..:  ..|...|. |:|:...| |....:.|||.:..||.||||||..:.::.|..:||:..:||
Mouse    70 NRTLLPNTTLTYD-IQRIHFHD-SFEATKKACDQLALGVVAIFGPSQGSCTNAVQSICNALEVPH 132

  Fly   115 IEFDISDEGIQAEKPNHQMT------LNLYPAQAILSKAYADIVQNFGWRKFTIVYDADDARAAA 173
                     ||....:|.:.      :||||..|.||.|..|:||:..||..|:||  ||:....
Mouse   133 ---------IQLRWKHHPLDNKDTFYVNLYPDYASLSHAILDLVQSLKWRSATVVY--DDSTGLI 186

  Fly   174 RLQDLLQLREVHNDVVRVRKFHKD-DDFRVMWKSI-RG-ERRVVLDCEPNMLVELLNSSTEFGLT 235
            |||:|:.....:|..:::|:...| ||.|.:.|.: || |.|::.||...|..::|..:...|:.
Mouse   187 RLQELIMAPSRYNIRLKIRQLPIDSDDSRPLLKEMKRGREFRIIFDCSHTMAAQILKQAMAMGMM 251

  Fly   236 GQYNHIFLTNLETYTDHLEELAADNETF---AVNITAARLLVNPDPPPYSLPYGYVTQR------ 291
            .:|.|...|.|:.|       |.|.|.:   .||:|..|:|...:|...::...:..:|      
Mouse   252 TEYYHFIFTTLDLY-------ALDLEPYRYSGVNLTGFRILNVDNPHVSAIVEKWAMERLQAAPR 309

  Fly   292 ------DNIVYESSDPPRTLIHDLIHDALQLFAQSWRNASFFYPDRMVVPRITCDFAASGGRTWA 350
                  |.::...:        .|::||:.:.:..::.|     .:|.|..:.|    ...:.|.
Mouse   310 AESGLLDGVMMTDA--------ALLYDAVHIVSVCYQRA-----PQMTVNSLQC----HRHKAWR 357

  Fly   351 MGRYLARLMK--------------GTSGVNNTNFRTSILQFDEDGQRITFNIEVYDPLDGIGIA- 400
            .|......:|              .|||: .|:|...|:...|||..   .:.|:.|.||:.|. 
Mouse   358 FGGRFMNFIKEAQWEGLTGRIVFNKTSGL-RTDFDLDIISLKEDGLE---KVGVWSPADGLNITE 418

  Fly   401 IWDPRGQITQLNV-DVKAQKKMIYRVATRIGPPYFSYNETARELNLTGNALYQGYAVDLIDAIAR 464
            :...||.    || |....:.:|  |.|.:..|:..:.::.|  .|.||..::||.:||:..:|.
Mouse   419 VAKGRGP----NVTDSLTNRSLI--VTTVLEEPFVMFRKSDR--TLYGNDRFEGYCIDLLKELAH 475

  Fly   465 HVGFEYVFVPVADQQYGKLDKETKQWNGIIGEIINNDAHMGICDLTITQARKTAVDFTVPFMQLG 529
            .:||.|....|.|.:||..| :..||||::.|:|::.|.:.:..||||..|:.|:||:.|||.||
Mouse   476 ILGFSYEIRLVEDGKYGAQD-DKGQWNGMVKELIDHKADLAVAPLTITHVREKAIDFSKPFMTLG 539

  Fly   530 VSILAYKSPH-VEKTLDAYLAPFGGEVWIWILISVFVMTFLKTIVARISKMDWENPHPCNRDPEV 593
            |||| |:.|: ...::.::|.|...::|:::|::...::.:..::||.|..:|.:.||||...||
Mouse   540 VSIL-YRKPNGTNPSVFSFLNPLSPDIWMYVLLAYLGVSCVLFVIARFSPYEWYDAHPCNPGSEV 603

  Fly   594 LENQWRIHNTGWLTVASIMTAGCDILPRSPQVRMFEATWWIFAIIIANSYTANLAAFLTSSKMEG 658
            :||.:.:.|:.|..:.|:|..|.:::|::...|:....||.|.:||.:|||||||||||..:||.
Mouse   604 VENNFTLLNSFWFGMGSLMQQGSELMPKALSTRIIGGIWWFFTLIIISSYTANLAAFLTVERMES 668

  Fly   659 SIANLKDLSAQKKVKFGTIYGGSTYNLLADSNETVYRLAFNLMNNDDPSAYTKDNLEGVDRVRKN 723
            .|.:..||:.|.|:::|.:..|:|......|..:.:...:..|:: .|||..|:|.||:.|..  
Mouse   669 PIDSADDLAKQTKIEYGAVKDGATMTFFKKSKISTFEKMWAFMSS-KPSALVKNNEEGIQRTL-- 730

  Fly   724 RGDYMFLMETTTLEYHREQNCDLRSVGEKFGEKHYAIAVPFGAEYRSNLSVAILKLSERGELYDL 788
            ..||..|||:||:||..::||:|..:|.....|.|.|..|.|:.||..:::|||:|.|..:|:.:
Mouse   731 TADYALLMESTTIEYITQRNCNLTQIGGLIDSKGYGIGTPMGSPYRDKITIAILQLQEEDKLHIM 795

  Fly   789 KQKWWKNPNASCFEEPDPDATPDMTFEELRGIFYTLYAGILIAFLIGITEFLVYVQQVALEERLT 853
            |:|||:  .:.|.||.:.:|:. :..:::.|||..|.||::::.|:.:.||:..:::.|..|:.:
Mouse   796 KEKWWR--GSGCPEEENKEASA-LGIQKIGGIFIVLAAGLVLSVLVAVGEFIYKLRKTAEREQRS 857

  Fly   854 FKDAFKKEIRFVL 866
            |......||||.|
Mouse   858 FCSTVADEIRFSL 870

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIICNP_608557.4 PBP1_iGluR_Kainate 26..404 CDD:107377 113/425 (27%)
Periplasmic_Binding_Protein_Type_1 <279..363 CDD:299141 12/109 (11%)
PBP2_iGluR_Kainate 423..794 CDD:270432 134/371 (36%)
Lig_chan 554..828 CDD:278489 96/273 (35%)
Grik3NP_001074566.1 PBP1_iGluR_Kainate_GluR5_7 34..417 CDD:107388 113/423 (27%)
PBP2_iGluR_Kainate_GluR7 433..801 CDD:270441 135/376 (36%)
Glutamate binding. /evidence=ECO:0000250 690..692 1/1 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846266
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.850

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