DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIC and LOC100149482

DIOPT Version :9

Sequence 1:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster
Sequence 2:XP_009290417.1 Gene:LOC100149482 / 100149482 -ID:- Length:1959 Species:Danio rerio


Alignment Length:998 Identity:194/998 - (19%)
Similarity:357/998 - (35%) Gaps:291/998 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 LKPEDGSV-TMQEHACDLIDNGVAAIFGPSSKAASDIVALVCN-------STG--IPHIEFDISD 121
            |:..|.|. |:....|||:             ||..:..||..       :||  .|.:||..:.
Zfish    96 LQVNDSSPRTLLSQLCDLL-------------AARPLQGLVYEDERPLPLATGPLAPMLEFVSAQ 147

  Fly   122 EGI------------QAEKPNHQMTLNLYPAQAILSKAYADIVQNFGWRKFTIVYDADDARAAAR 174
            .|:            :..:.:..:.|....:.|:..:...::::.:.|..|::|......     
Zfish   148 TGLPIVAVGGGAALGRVPQESGSIFLQFSSSTALQLEVIFEVLEEYDWTAFSVVSTRHHG----- 207

  Fly   175 LQDLLQLREVHND---------------------VVRVRKFHKDDDFRVMWKSIRGERRVVLDCE 218
            .||.|.:.|...|                     .||.::..|:::.:|.          :|.|.
Zfish   208 YQDFLSVVEGLTDGSFIGWEKKSIVMLNLTDDPGGVRTQRLLKENEAQVR----------LLYCS 262

  Fly   219 PNMLVELLNSSTEFGLTGQYNHIFLTNLETYTDHLEELAADNETFAVNITAARLLVNPDPPPYSL 283
            .....::..::...|..|. :||:                    |||....:.|.:...|.    
Zfish   263 QEEAEQVFLAAWAAGQAGA-SHIW--------------------FAVGPALSELGLTGLPK---- 302

  Fly   284 PYGYVTQRDNIVYESSDPPRTLIHDLIHDALQLFA---QSWRNASFFYPDRMVVPRITC------ 339
                                           :|||   |.||:.    |.|.:...::.      
Zfish   303 -------------------------------RLFAVRPQGWRDE----PRRRIARGVSILTHGAV 332

  Fly   340 ----DFAASGG---------------RTWAMGRYLARLMKGTSGVNNTNFRTSILQFDEDGQRIT 385
                |:.|:||               |.....||.:.:..|....:          |..:|....
Zfish   333 ALRKDYGATGGPHFVTNCQTDGNRTQRIRGRMRYFSNITLGGRDYS----------FSNEGYLAN 387

  Fly   386 FNIEV--YDPLDGIGIAIWDPRGQITQLNVDVKAQKKMIYRVATRIGPPYFSYNETARELN---- 444
            ..::|  |.|..|.....|...|.:           ::.|...:|.| |:....:.|:.|.    
Zfish   388 PFLDVISYTPGSGWEDVGWWENGVL-----------RLRYPAWSR
YG-PFLQPPDDAQHLRVVTL 440

  Fly   445 ----------------------------LTGNALYQ----------GYAVDLIDAIARHVGFEYV 471
                                        |..:||.:          |:.:|::..:||.|||.|.
Zfish   441 EERPFVIVELADAASGTCIRDSVPCRRPLNASALQEGVAPVKQCCKGFCIDILKRLARIVGFTYD 505

  Fly   472 FVPVADQQYGKLDKETKQWNGIIGEIINNDAHMGICDLTITQARKTAVDFTVPFMQLGVSILAYK 536
            ...|.:.::||  |....|||::||::...|.|.|..|||.:.|...|||:|||::.|:|::..:
Zfish   506 LYLVTNGKHGK--KIDGVWNGMVGEVVYKRADMAIGSLTINEERSEVVDFSVPFVETGISVMVSR 568

  Fly   537 SPHVEKTLDAYLAPFGGEVWIWILISVFVMTFLKTIVARISKMDWENPHPCNRD----PEVLENQ 597
            | :...:..|:|.|:...||    :.:|||. |..:...:...::.:|...||.    .:...::
Zfish   569 S-NGTVSPSAFLEPYSPAVW----VMMFVMC-LTVVAVTVFIFEFFSPVGYNRSLQSGKKAGGSK 627

  Fly   598 WRIHNTGWLTVASIMTAGCDI-LPRSPQVRMFEATWWIFAIIIANSYTANLAAFLTSSKMEGSIA 661
            :.|..:.||..|.:......: .|:....::....|..||:|...|||||||||:...:...:::
Zfish   628 FTIGKSIWLLWALVFNNSVPVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEEYIDTVS 692

  Fly   662 NLKDLSAQ------KKVKFGTIYGGSTYNLLADSNETV--YRLAFNLMNNDDPSAYTKDNLEGVD 718
            .|.|...|      ..:||||:..|||...:..:...:  |.:.:|..:.:|          .:.
Zfish   693 GLSDKKFQHPTEQYPPLKFGTVPNGSTEKNIRSNYPDMHQYMVKYNQKSVED----------AIS 747

  Fly   719 RVRKNRGDYMFLMETTTLEY--HREQNCDLRSV--GEKFGEKHYAIAVPFGAEYRSNLSVAILKL 779
            .::..:.| .|:.:...|.|  .:::.|.:.::  |:.|....|.||:...:.::..|.:|:|:|
Zfish   748 HLKTGKLD-AFIYDAAVLNYMARKDEGCKVMTIGSGKVFATTGYGIALIKNSRWKRPLDLALLQL 811

  Fly   780 SERGELYDLKQKWWKNPNASCFEEPDPDATPDMTFEELRGIFYTLYAGILIAFLIGITEFLVY-- 842
            ....|:..|::.|.   :..|..:.....:..:..:.:.|:||.|...:.::.|:...|.|||  
Zfish   812 VGDDEIEMLERLWL---SGICHNDKIEVMSSKLDIDNMAGVFYMLLVAMGLSLLVFAWEHLVYWR 873

  Fly   843 ----VQQVALEERLTFKDAFKKEIRFVLCVWNNR------KPIVAGTPISSVRTTPRRSLDKSLD 897
                :.::....:|.|..||.:.: :..|.:.:.      |..|:|...:::             
Zfish   874 LRHCMSKMGQSGKLDFLLAFSRGM-YSCCSFEDETAQGGAKVTVSGHHHTAM------------- 924

  Fly   898 RTPKSSRRVVIGRSSEEMREMAQ 920
             .|.||..||....|.....|.|
Zfish   925 -VPTSSSHVVTSAVSNPAIAMVQ 946

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIICNP_608557.4 PBP1_iGluR_Kainate 26..404 CDD:107377 65/409 (16%)
Periplasmic_Binding_Protein_Type_1 <279..363 CDD:299141 16/111 (14%)
PBP2_iGluR_Kainate 423..794 CDD:270432 102/429 (24%)
Lig_chan 554..828 CDD:278489 62/290 (21%)
LOC100149482XP_009290417.1 PBP1_iGluR_NMDA_NR2 44..421 CDD:107373 67/433 (15%)
PBP2_iGluR_NMDA_Nr2 433..831 CDD:270436 98/419 (23%)
HisJ <487..>570 CDD:223904 33/85 (39%)
Lig_chan 585..857 CDD:278489 62/290 (21%)
NMDAR2_C 868..>900 CDD:287527 7/32 (22%)
FAM76 <1763..>1856 CDD:292665
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591037
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.