DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lsp1beta and PPO1

DIOPT Version :9

Sequence 1:NP_001285556.1 Gene:Lsp1beta / 33274 FlyBaseID:FBgn0002563 Length:789 Species:Drosophila melanogaster
Sequence 2:NP_476812.1 Gene:PPO1 / 37044 FlyBaseID:FBgn0283437 Length:690 Species:Drosophila melanogaster


Alignment Length:670 Identity:164/670 - (24%)
Similarity:279/670 - (41%) Gaps:137/670 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   102 HAKQARGLFNFFYYAKDWETFAANVAWARMHVNEGMFVYALTMAVIHRNDFHGLMLPSIYEIFPQ 166
            |.:.|..|...|..|.:...|.:...:.:..||..:|.||..:||.||.|...:.:.:|.:|||.
  Fly    91 HREIASELITLFMSAPNLRQFVSLSVYTKDRVNPVLFQYAYAVAVAHRPDTR
EVPITNISQIFPS 155

  Fly   167 FFFNSKFVFEAEKFDYEMWMKMTMYEKEYMDVYYKTNGYDYSTMYRSSDYTYMKDFKTWQWWKLM 231
            .|.......:|.:       :.::..:....|:     .|....|.:||                
  Fly   156 NFVEPSAFRDARQ-------EASVIGESGARVH-----VDIPQNYTASD---------------- 192

  Fly   232 GLGEHWYTEDKFILRENIYEFNQETKWLSMMKDVKKFYMPVDYTRDLNLYNKESKLSYFTEDLGW 296
                          ||:                                   |.:|:||.||:|.
  Fly   193 --------------RED-----------------------------------EQRLAYFREDIGV 208

  Fly   297 NAYWYYLNMDYSFFLDGNTFDLKNDRRGEWWLYNVHQLLSRYYMERLSHGFGEI-PEFSWYQQIE 360
            |::.::.::.|.  ..|.|..:..|||||.:.|..||:|:||.:||..:...:: |..:...::.
  Fly   209 NSHHWHWHLVYP--TTGPTEVVNKDRRGELFYYMHHQILARYNVERFCNNLKKVQPLNNLRVEVP 271

  Fly   361 MGYDPQLI-YYNGIGYSFRKNYYEMETYANYD---MLDKITGFLKRIHNIVEMGYYKTADGHTID 421
            .||.|::: ..|...|..|....::.....:|   .:..:..:..|:...::.||.:.:.|:.|.
  Fly   272 EGYFPKILSSTNNRTYPARVTNQKLRDVDRHDGRVEISDVERWRDRVLAAIDQGYVEDSSGNRIP 336

  Fly   422 LRKPEAIEFIGNMLQGN-VDAMDKMFYQFWYMLAH--MYFA-DADYYQMDVYPNVMLNFETMMRD 482
            |.:...|:.:|||::.: |.:::..||...:...|  :.|| |.||..::.: .||.:..|.|||
  Fly   337 LDEVRGIDILGNMIEASPVLSINYNFYGNLHNEGHNIISFAHDPDYRHLEEF-GVMGDVTTAMRD 400

  Fly   483 PMYYMFYKSIAQVYFQFMHYLPKYTKEQLLMPGVTM---------KNVEVSDLTTYF-----DL- 532
            |::|.::..|..|:.:|...|..|...:|...|:|:         .|.:.:.|.||:     || 
  Fly   401 PIFYRWHGFIDTVF
NKFKTRLNPYNAGELNFDGITVDYIEAKIGKSNTKANTLLTYWQKSSADLA 465

  Fly   533 --VDFDVTNMLNDKMIFQDGKFVWDMSLFARQMRLNHKPFTYTYTIESEKVEKV-VIRAFLGPKF 594
              :||..|.               |.::||....|.:.|||||:.:.:....:. ..|.|:.||.
  Fly   466 AGLDFGPTT---------------DRNIFASFTHLQNAPFTYTFNVTNNGARRTGTCRIFICPKV 515

  Fly   595 DEFGKVISLAENRMNFMEIDEFYYELKAGTNKITRKSSEFYWTVKDRTTYTEL-YYYTMMAFD-- 656
            ||..:.::|.|.|:..:|:|:|..:|..|.|.|.|:|:|....:....::..: ..|...|.|  
  Fly   516 DERNQALNLEEQRLLAIEMDKFTVDLVPGENTIRRQSTESSVAIPFERSFRPVGADYQPKAADEL 580

  Fly   657 GKYDFPLDISEPHCGFPDRLVLPMGWQKGMPMQMFFMVVPYVAPAHEQFST----FDYTYS-CGI 716
            .::.|      ..||:|..|:||.|..:||...:|.|:..|...:.||..|    ....|| ||:
  Fly   581 ARFKF------CGCGWPQHLLLPKGNAQGMVFDLFVMISDYSQDSVEQPKTPNDACSTAYSFCGL 639

  Fly   717 GSGARYVDSLPFGYPFDRAI 736
             ....|.|....||||||.:
  Fly   640 -KDKLYPDRRTMGYPFDRRL 658

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lsp1betaNP_001285556.1 Hemocyanin_N 32..154 CDD:281684 16/51 (31%)
Hemocyanin_M 161..496 CDD:278784 72/343 (21%)
Hemocyanin_C 505..755 CDD:281685 72/258 (28%)
PPO1NP_476812.1 Hemocyanin_N 27..142 CDD:281684 16/50 (32%)
Hemocyanin_M 152..414 CDD:278784 72/341 (21%)
Hemocyanin_C 423..682 CDD:281685 72/258 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45470657
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11511
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

Return to query results.
Submit another query.