DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ninaA and ppwd1

DIOPT Version :10

Sequence 1:NP_476656.1 Gene:ninaA / 33271 FlyBaseID:FBgn0002936 Length:237 Species:Drosophila melanogaster
Sequence 2:XP_002934239.3 Gene:ppwd1 / 100488042 XenbaseID:XB-GENE-1001509 Length:640 Species:Xenopus tropicalis


Alignment Length:214 Identity:78/214 - (36%)
Similarity:99/214 - (46%) Gaps:44/214 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 ILCSAFLAVASGLSFTVTSRIYMDVK--------HNKKP-------------------------- 39
            |:|:||   .....:..|.|...|.|        .|:||                          
 Frog   432 IVCTAF---KKNRFYVFTKREPEDTKSAESDRDVFNEKPSKEEVMAATQAEGSKRVSDSAIIHTS 493

  Fly    40 VGRITFGLFGKLAPKTVANFRHICLRGINGTSYVGSRFHRVVDRFLVQGGDIVNGDGTGSISIYG 104
            :|.|...||....||||.||   |:...|| .|....||||:..|::|.|| ..|.|.|..||:|
 Frog   494 MGDIHVKLFPVECPKTVENF---CVHSRNG-YYNRHMFHRVIKGFMIQTGD-PTGTGMGGESIWG 553

  Fly   105 DYFPDEDKALAVEHNRPGYLGMANRGPDTNGCQFYVTTVGAKWLDGKHTVFGKVLEGMDTIYAIE 169
            ..|.||..| .:.|:||..|.|||.||.|||.||::|.|...|||.||||||:|.:||:.:..|.
 Frog   554 GEFEDEFHA-TLRHDRPYTLSMANAGPSTNGSQFFLTVVPTPWLDNKHTVFGRVTKGMEVVQRIC 617

  Fly   170 DVKTD-TDDFPVEPVVISN 187
            :.|.: ..|.|.|.:.|.|
 Frog   618 NSKVNPKTDKPYEDISIIN 636

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaANP_476656.1 cyclophilin 27..189 CDD:469651 73/196 (37%)
ppwd1XP_002934239.3 WD40 83..312 CDD:475233
WD40 repeat 88..125 CDD:293791
WD40 repeat 131..169 CDD:293791
WD40 repeat 177..213 CDD:293791
WD40 repeat 221..266 CDD:293791
cyclophilin_WD40 489..637 CDD:238908 67/154 (44%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.