DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG13950 and lec-2

DIOPT Version :9

Sequence 1:NP_001334728.1 Gene:CG13950 / 33267 FlyBaseID:FBgn0031289 Length:316 Species:Drosophila melanogaster
Sequence 2:NP_001379091.1 Gene:lec-2 / 174560 WormBaseID:WBGene00002265 Length:1245 Species:Caenorhabditis elegans


Alignment Length:326 Identity:72/326 - (22%)
Similarity:117/326 - (35%) Gaps:90/326 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 WKAKVLTEVPFGHVLIVSGRVKPHPNKISLDLTDNVNAQNESETVFLKIEANFREGQIIRSMFQP 68
            :::|::.....|..|||.|:......:.:::|..| .|......|.|.:...|.||:::.:.|..
 Worm   978 YRSKLVEPFEPGQTLIVKGKTGEDSIRFTVNLHTN-TADFSGNDVPLHVSVRFDEGKLVFNTFSK 1041

  Fly    69 GGGWQQEEISKNWKCDGPKNPLQPGQSFTFRVAVLQRCFEIYVNDQLYGSFEFVKFPKQINYVRT 133
             |.|.:||        ...||.:.|.....|:......|:|:|                      
 Worm  1042 -GEWGKEE--------RKSNPYKKGDDIDIRIRAHDSKFQIFV---------------------- 1075

  Fly   134 YGDFEKITQFHHRMLFPLVFPRTLMCPDKVAFQSDV------------PRRYETGTVVAMECIAK 186
              |.:::.::.||:....:...|:        ..||            |..||:|  :|.|.:|.
 Worm  1076 --DQKEVKEYEHRVPLSSITHFTI--------DGDVLVNYIHWGGKYYPVPYESG--LAGEGLAP 1128

  Fly   187 GPPTTEFSICFQCNDTGRTVLRFHVN---------------FDRTTVSRSYQREDNSF---ALSD 233
            |...|.|.|      ..:...|||:|               ||...|.|      ||.   |..:
 Worm  1129 GKTLTVFGI------PEKKAKRFHINLLKKNGDIALHLNARFDEKHVVR------NSLINSAWGN 1181

  Fly   234 EETEGEFPFVRGKLFKIAFGLGDRAFLIAVNGQYFTYYNFPGRPFSISTLKCFTNEVGDFAVRSL 298
            ||.||:.||.:...|.:.......||.:.|||:.|..|.....|..::.|:.    .||..:..:
 Worm  1182 EEREGKMPFEKAVGFDLEIHNEPYAFAVTVNGERFASYAHRLSPDEVNGLQI----GGDVEITGI 1242

  Fly   299 E 299
            :
 Worm  1243 Q 1243

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13950NP_001334728.1 None
lec-2NP_001379091.1 rne <136..298 CDD:236766
PRK14949 <235..662 CDD:237863
rne <474..771 CDD:236766
rne <794..963 CDD:236766
GLECT 978..1108 CDD:214596 32/171 (19%)
GLECT 1116..1243 CDD:238025 39/144 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11346
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.