DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment drongo and git1

DIOPT Version :9

Sequence 1:NP_001162848.1 Gene:drongo / 33263 FlyBaseID:FBgn0020304 Length:673 Species:Drosophila melanogaster
Sequence 2:XP_697386.4 Gene:git1 / 568935 ZFINID:ZDB-GENE-100408-5 Length:761 Species:Danio rerio


Alignment Length:646 Identity:110/646 - (17%)
Similarity:190/646 - (29%) Gaps:261/646 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 CFDCGQKGPTYVNMTIGSFVCTRCSGVLRGLTPPHRVKSISMATFTQDEIDFLRSHGNELCAKTW 94
            |.||....|.:.::..|..:|..|..|.|.|.     :.||:       :..||..|        
Zfish    11 CADCSAPDPGWSSINRGVLICDECCSVHRSLG-----RHISI-------VKHLRHSG-------- 55

  Fly    95 LGLWDPKRAVHQQEQRELMMDKYERKRYYLEPASPLKSLANAVNLKSSAPATNHTQNGHQNGYAS 159
               |.|                               ||...|...:|        ||..:.:..
Zfish    56 ---WPP-------------------------------SLLQMVQTLAS--------NGANSIWEH 78

  Fly   160 IHLTPPAAQ--RTSANGLQKVANSSS-------------------NSSGKTSSSISRPHYNHQNN 203
            ..|.|...|  |...|...||..:.|                   :..|.|:..:|:        
Zfish    79 SLLDPAQVQSGRRKPNPQDKVHPTKSEFIRAKYQMLAFVHKLPCRDDDGVTTKDLSK-------- 135

  Fly   204 SQNNNHDAFGLGGGLSSLNSAGSTSTGALSDTSSCASNGFGADCDFV-ADFGSANIFDATSA--- 264
                            .|:|  |..||:|.......|  .||..:|. .:.|:..:..|..|   
Zfish   136 ----------------QLHS--SVRTGSLETCLRLLS--LGAQANFFHPEKGTTPLHVAAKAGQV 180

  Fly   265 ----------RSTGSPAVSSVSSVGSSNGYAKVQPIRAAHLQQQQQL---QQQLHQQQLL----- 311
                      ...|:|.::..:.:    .||:    :|.|::..::|   |.:|..:...     
Zfish   181 LQAELLVVYGADPGAPDINGRTPI----DYAR----QAGHVELAERLVECQYELTDRLAFYLCGR 237

  Fly   312 ---NGNGHQGTENFADFDHAPIYNAVAPPTFNDWISDWSRRGFHDPFDDCDDSPPGARPPAPA-- 371
               :.|||......||                                       .|||..|.  
Zfish   238 RPDHKNGHYIIPQMAD---------------------------------------RARPKCPTQS 263

  Fly   372 --------PAPAQVPAVSSPLPTVREEPELAWNFWEDEMRIEAQEKES--QTKQPELGYSFSIST 426
                    .|..::.|:::     |...|||.:.:::   ::.:|.::  .|.|       :.||
Zfish   264 LDLSELAKAAKKKLQALNN-----RLFEELAMDVYDE---VDRRENDAVWLTTQ-------NHST 313

  Fly   427 TTPLSPSNPFLP----YLVSEEQHRNHPEK---PSFSYSLFSSISNSSQEDQ-------ADDHEM 477
            ......:.||||    |..:..|.|....:   ..|:..:...:|::.:...       .|..::
Zfish   314 LVTERSAVPFLPVNPEYSATRNQGRQKLARFNAREFATLIIDILSDAKRRQHGKGLTSPTDPLDL 378

  Fly   478 NVLNANFHDFFTWSA--------PLQNGHTTSPPKGGNA---------------------AMAPS 513
            :.::.:.||:.:.::        ..||.:.|.......:                     |:|.|
Zfish   379 SQVDDDQHDYDSVASDEDTDSELTAQNNNNTQRNNRAKSMDSSDLSDGPITLQEYLEVKKALASS 443

  Fly   514 EDRYAAL----KDLDEQLRELKASESATETPTPTSGNVQ----ATDAFGGALNNNPNPFKG 566
            |.:...|    .:|.|:||.|:...|..:|........|    ||...||...:.|:..:|
Zfish   444 EAKVQQLMKVNNNLSEELRRLQKEISRMQTENSALRGAQAGSGATMTGGGVPGHWPDRVRG 504

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
drongoNP_001162848.1 ArfGap 15..126 CDD:279720 17/95 (18%)
git1XP_697386.4 ArfGap 3..124 CDD:214518 31/174 (18%)
ANK <123..220 CDD:238125 22/132 (17%)
Ank_2 137..229 CDD:289560 22/103 (21%)
ANK repeat 137..165 CDD:293786 10/31 (32%)
ANK repeat 167..197 CDD:293786 4/29 (14%)
GIT_SHD <281..301 CDD:285690 4/27 (15%)
GIT_SHD 337..364 CDD:285690 3/26 (12%)
GIT_CC 416..479 CDD:293167 12/62 (19%)
GIT1_C 639..754 CDD:289013
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5347
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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