DRSC/TRiP Functional Genomics Resources

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Protein Alignment drongo and Arfgap1

DIOPT Version :9

Sequence 1:NP_001162848.1 Gene:drongo / 33263 FlyBaseID:FBgn0020304 Length:673 Species:Drosophila melanogaster
Sequence 2:XP_006235793.1 Gene:Arfgap1 / 246310 RGDID:708452 Length:425 Species:Rattus norvegicus


Alignment Length:479 Identity:103/479 - (21%)
Similarity:162/479 - (33%) Gaps:142/479 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 LRELVASGTGSNRQCFDCGQKGPTYVNMTIGSFVCTRCSGVLRGLTPPHR--VKSISMATFTQDE 78
            |:|:.|.  ..|..||:||...|.:|::|.|.::|..|||..||| ..|.  |:|::|..:...|
  Rat    10 LKEVRAQ--DENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGL-GVHLSFVRSVTMDKWKDIE 71

  Fly    79 IDFLRSHGNELCAKTWLGLWDPKRAVHQQEQRE---LMMDKY----------------ERKRYYL 124
            ::.:::.||   ||.       :..:..|:..|   .:.|||                |.|.:.|
  Rat    72 LEKMKAGGN---AKF-------REFLEAQDDYEPSWSLQDKYSSRAAALFRDKVATLAEGKEWSL 126

  Fly   125 EPASPLKSLANAVNLKSSAPATNHTQNGHQNGYASIHLTPPAAQRTSANGLQKVANSSSNSSGKT 189
            |                |:||.|              .|||..:.     ||..|:..:......
  Rat   127 E----------------SSPAQN--------------WTPPQPKT-----LQFTAHRPAGQPQNV 156

  Fly   190 SSSISRPHYNHQNN-------SQNNNHDAFG------------LGGGLSSLNSAGSTSTGALSDT 235
            ::|..:...:..|:       :|.|.:..||            |...:|||.|..|:.|...|..
  Rat   157 TTSGDKAFEDWLNDDLGSYQGAQENRYVGFGNTVPPQKREDDFLNSAMSSLYSGWSSFTTGASKF 221

  Fly   236 SSCASNG---FGADC-----------DFVADFG----------------SANIFDATSARSTGSP 270
            :|.|..|   ||:..           :..::.|                ...|||..|  |..|.
  Rat   222 ASAAKEGATKFGSQASQKFWGYKQQSEPASELGHSLNENVLKPAQEKVKEGRIFDDVS--SGVSQ 284

  Fly   271 AVSSVSSVGSSNGYAKVQPIRAAHLQQQQQLQQQLHQQQLLNGNGHQGTENFADFDHAPIYNAVA 335
            ..|.|..|| |.|:..|....:...:.......:.|..|  |.:|.....:..|......:.:..
  Rat   285 LASKVQGVG-SKGWRDVTTFFSGKAEDTSDRPLEGHSYQ--NSSGDNSQNSTIDQSFWETFGSAE 346

  Fly   336 PPTFNDWISD-WSRRGFHDPFDDCDDSPPGARPPAPAPAPAQVPAVSSPLPTVREEPELAWNFWE 399
            ||......|| |:          |.|:..|.|............|.::     :......|..||
  Rat   347 PPKAKSPSSDSWT----------CADASTGRRSSDSWDIWGSGSASNN-----KNSNSDGWESWE 396

  Fly   400 ---DEMRIEAQEKESQTKQPELGY 420
               .|.|.:|.:|.:.:...:.|:
  Rat   397 GASGEGRAKATKKAAPSTAADEGW 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
drongoNP_001162848.1 ArfGap 15..126 CDD:279720 36/130 (28%)
Arfgap1XP_006235793.1 ArfGap 7..114 CDD:279720 33/116 (28%)
DUF4048 <325..376 CDD:289997 11/60 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5347
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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