DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dock and grapb

DIOPT Version :10

Sequence 1:NP_722657.1 Gene:dock / 33262 FlyBaseID:FBgn0010583 Length:548 Species:Drosophila melanogaster
Sequence 2:NP_001025251.2 Gene:grapb / 555184 ZFINID:ZDB-GENE-050913-4 Length:214 Species:Danio rerio


Alignment Length:194 Identity:53/194 - (27%)
Similarity:78/194 - (40%) Gaps:64/194 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   331 ALYSFTSNNDQELSFEKGDRLEIVDRPASDPDWYKARNNQGQVGLVPRNYLQELNDYLATPYRNA 395
            |||||.:....||||:||:.|::.:.. .||:||.| ...|:.|.||:||:              
Zfish     5 ALYSFRATECDELSFQKGEILKVTNMD-DDPNWYTA-ELLGRRGYVPKNYI-------------- 53

  Fly   396 SASAGNGNGGGSNGGAGGGGGNDSMERRNEGNKPAAQSSGQPIERPNLAGKSWYYGAITRSQCDT 460
                                                          |:...:|:.|.|:|...:.
Zfish    54 ----------------------------------------------NVRPHTWFVGGISRQAAEN 72

  Fly   461 VLNGHGHDGDFLIRDSETNMGDYSVSLKAPGRNKHFRVHVE-QNMYCIGQRKFHSLDQLVDHYQ 523
            .|... ..|.||||:||:..|::|||:......:||:|..: ...|.|....|.||:||||.|:
Zfish    73 RLRPL-ECGAFLIRESESTPGEFSVSVSYGDHVQHFKVLKDGLGQYFIWDEVFSSLNQLVDFYR 135

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dockNP_722657.1 SH3_Nck_1 154..204 CDD:212699
SH3_Nck_2 256..308 CDD:212700
SH3_Nck_3 328..383 CDD:212701 23/51 (45%)
SH2_Nck_family 446..538 CDD:198196 29/79 (37%)
grapbNP_001025251.2 SH3 2..55 CDD:473055 23/111 (21%)
SH2_Grb2_like 56..149 CDD:199828 29/81 (36%)
SH3 159..211 CDD:473055
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.