DRSC/TRiP Functional Genomics Resources

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Protein Alignment dock and grb2a

DIOPT Version :10

Sequence 1:NP_722657.1 Gene:dock / 33262 FlyBaseID:FBgn0010583 Length:548 Species:Drosophila melanogaster
Sequence 2:NP_001007770.1 Gene:grb2a / 493609 ZFINID:ZDB-GENE-041121-1 Length:217 Species:Danio rerio


Alignment Length:222 Identity:60/222 - (27%)
Similarity:101/222 - (45%) Gaps:69/222 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   330 VALYSFTSNNDQELSFEKGDRLEIVDRPASDPDWYKARNNQGQVGLVPRNYLQELNDYLATPYRN 394
            :|.|.|.:..|.||||::|:.|::::... |.:||||..| |:.|.:|:||::            
Zfish     4 IAKYDFKATADDELSFKRGEILKVLNEEC-DQNWYKAELN-GKEGFIPKNYIE------------ 54

  Fly   395 ASASAGNGNGGGSNGGAGGGGGNDSMERRNEGNKPAAQSSGQPIERPNLAGKSWYYGAITRSQCD 459
                                            .||                ..|:||.|.|::.:
Zfish    55 --------------------------------MKP----------------HPWFYGKIPRAKAE 71

  Fly   460 TVLNGHGHDGDFLIRDSETNMGDYSVSLKAPGRNKHFRVHVE-QNMYCIGQRKFHSLDQLVDHYQ 523
            .:||...|||.||||:||:..||:|:|:|.....:||:|..: ...|.:...||:||:.|||:::
Zfish    72 EMLNKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNSLVDYHR 136

  Fly   524 RAPIYTNKQGEKLYL--VRSLPKANGT 548
            ...:..|   :.::|  :..:|: |.|
Zfish   137 STSVSRN---QPIFLRDIEQVPQ-NST 159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dockNP_722657.1 SH3_Nck_1 154..204 CDD:212699
SH3_Nck_2 256..308 CDD:212700
SH3_Nck_3 328..383 CDD:212701 21/52 (40%)
SH2_Nck_family 446..538 CDD:198196 33/92 (36%)
grb2aNP_001007770.1 SH3_GRB2_N 1..56 CDD:212879 21/97 (22%)
SH2_Grb2_like 56..150 CDD:199828 36/112 (32%)
SH3_GRB2_C 160..212 CDD:212882 60/222 (27%)
Blue background indicates that the domain is not in the aligned region.

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