DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dock and nck1

DIOPT Version :9

Sequence 1:NP_001259845.1 Gene:dock / 33262 FlyBaseID:FBgn0010583 Length:548 Species:Drosophila melanogaster
Sequence 2:NP_001008101.1 Gene:nck1 / 493463 XenbaseID:XB-GENE-6085807 Length:377 Species:Xenopus tropicalis


Alignment Length:404 Identity:177/404 - (43%)
Similarity:257/404 - (63%) Gaps:51/404 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   155 VVAKYDYAAQGAQELDLRKNERYLLLDDSKHWWRVQNSRNQSGYVPSNYVKKEKPSLFDSIKKKV 219
            ||||:||.||..||||::||||..||||||.||||:||.|::|:||||||:::..:...||.|.:
 Frog     8 VVAKFDYVAQQDQELDIKKNERLWLLDDSKSWWRVRNSMNKTGFVPSNYVERKNSARKASIVKNL 72

  Fly   220 KKGSGSKTLPNCSPSRQVESPTMSRRLPPDPAEAI----GTAVVKYNYQAQQPDELSLTKGTRIL 280
            |...|...:.. .||....:.|....||  .||.:    ..|.||:.|.|::.|||||.|||:::
 Frog    73 KDTLGIGKVKR-KPSMPDSASTADDSLP--DAERLYDLNMPAYVKFTYTAERDDELSLVKGTKVI 134

  Fly   281 ILEKSNDGWWRGQSGNSVGWFPSNYTTEDCDNDG--EIHTY-----AMAENV-----LDIVVALY 333
            ::||.:||||||.....||||||||.||:.|:..  ::.|.     |:..|:     |.:|.|||
 Frog   135 VMEKCSDGWWRGSYNGRVGWFPSNYVTEENDSPSGDQVGTLTEKLAAVVNNLNNGRSLHVVQALY 199

  Fly   334 SFTSNNDQELSFEKGDRLEIVDRPASDPDWYKARNNQGQVGLVPRNYLQELNDYLATPYRNASAS 398
            .|:|:|::||:||||:.::::::|.:||:|:|.|.:.|.|||||:||:..:.::..||       
 Frog   200 PFSSSNEEELNFEKGEVMDVIEKPENDPEWWKCRKSNGLVGLVPKNYVTIMQNFQPTP------- 257

  Fly   399 AGNGNGGGSNGGAGGGGGNDSMERRNEGNKPAAQSSGQPIERPNLAGKSWYYGAITRSQCDTVLN 463
                             ..:.:..|.:...|:|  ||:      .||..||||.:||.|.:..||
 Frog   258 -----------------SFEPLPPRCDYIGPSA--SGR------FAGNQWYYGKVTRHQAEMALN 297

  Fly   464 GHGHDGDFLIRDSETNMGDYSVSLKAPGRNKHFRVHVEQNMYCIGQRKFHSLDQLVDHYQRAPIY 528
            ..|::|||||||||::..|:||||||.|:||||:|.::..|||||||||.::::||:||::|||:
 Frog   298 ERGNEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQMKDCMYCIGQRKFSTMEELVEHYKKAPIF 362

  Fly   529 TNKQGEKLYLVRSL 542
            |::|||||||::.|
 Frog   363 TSEQGEKLYLIKPL 376

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dockNP_001259845.1 SH3_Nck_1 154..204 CDD:212699 34/48 (71%)
SH3_Nck_2 256..308 CDD:212700 29/51 (57%)
SH3_Nck_3 328..383 CDD:212701 27/54 (50%)
SH2_Nck_family 446..538 CDD:198196 54/91 (59%)
nck1NP_001008101.1 SH3_Nck1_1 4..62 CDD:212833 36/53 (68%)
SH3_Nck1_2 108..162 CDD:212834 29/53 (55%)
SH3_Nck1_3 193..249 CDD:212837 27/55 (49%)
SH2_Nck1 280..376 CDD:198271 56/95 (59%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 107 1.000 Domainoid score I6426
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H38148
Inparanoid 1 1.050 333 1.000 Inparanoid score I2377
OMA 1 1.010 - - QHG46567
OrthoDB 1 1.010 - - D1097449at2759
OrthoFinder 1 1.000 - - FOG0002240
OrthoInspector 1 1.000 - - otm47582
Panther 1 1.100 - - LDO PTHR19969
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4150
SonicParanoid 1 1.000 - - X1672
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1212.110

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