DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3862 and HERC1

DIOPT Version :9

Sequence 1:NP_608550.1 Gene:CG3862 / 33261 FlyBaseID:FBgn0031286 Length:454 Species:Drosophila melanogaster
Sequence 2:XP_016878188.1 Gene:HERC1 / 8925 HGNCID:4867 Length:4909 Species:Homo sapiens


Alignment Length:420 Identity:115/420 - (27%)
Similarity:184/420 - (43%) Gaps:70/420 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 VYVWGFQETGAL---GLQTNVKKAKERYTEMVHHPTRLQFSNNNEITDVAAGYGFTVYAVNRDDG 107
            ||:||....|.|   |....|..|...:               ::...|..|...|.  |.:.:|
Human  4047 VYLWGAGRHGQLAEAGRNVMVPAAAPSF---------------SQAQQVICGQNCTF--VIQANG 4094

  Fly   108 ETLFGSGLNTDSQLGFQVKGNPNDPANLDVIIYPTAIKLPRVQGETDEDMRVKSMSAGRAHLVVL 172
             |:...|..:..:||   :||.:|...|.||        ..:||.....:.....|.|  |.:.|
Human  4095 -TVLACGEGSYGRLG---QGNSDDLHVLTVI--------SALQGFVVTQLVTSCGSDG--HSMAL 4145

  Fly   173 TQNGTIFTLGNNSYGQCGRSIIEEERYSKSALIHRISQEDICGKEDEVVQVECGQDHSMFLTKKG 237
            |::|.:|:.|:..||:.|....:.:|..:..       |.:.|  :||||:.||..||..:|..|
Human  4146 TESGEVFSWGDGDYGKLGHGNSDRQRRPRQI-------EALQG--EEVVQMSCGFKHSAVVTSDG 4201

  Fly   238 RIYTCGWGADGQTGQGNYHTAG-----QITLIGGDVEKEKIVRLSCSSDCVLALNEAGD-AFGWG 296
            :::|.|.|..|:.|.||  |:.     ::|.:.|    .:|.:::|..:..||::..|. .:.:|
Human  4202 KLFTFGNGDYGRLGLGN--TSNKKLPERVTALEG----YQIGQVACGLNHTLAVSADGSMVWAFG 4260

  Fly   297 NSEYGQLDDSELAETQINIPRALKLTKSIGKIKDVAAGGSFCMALNDQGLVYTWGFG-ILGFGP- 359
            :.:||:|....  .|..:.|:.:.:...|| ||.||.|..|.:||...|.|||:|.. ::|... 
Human  4261 DGDYGKLGLGN--STAKSSPQKIDVLCGIG-IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEG 4322

  Fly   360 FVEQTSKPQHLLPPLFGRNDFSNETTVVSIGCGVFHMGAVNSDGDLFMWGKNRFGHLGLGHKKDQ 424
            .....::||. :|.|.|       ..:..:..|..|..|:.|:||::.||.|..|.|||||....
Human  4323 RARNHNRPQQ-IPVLAG-------VIIEDVAVGAEHTLALASNGDVYAWGSNSEGQLGLGHTNHV 4379

  Fly   425 FFP-FKAAINGK-VTKVAYGVDHTIALCKP 452
            ..| ....:.|| |.:::.|..|:.|...|
Human  4380 REPTLVTGLQGKNVRQISAGRCHSAAWTAP 4409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3862NP_608550.1 RCC1 43..99 CDD:278826 11/55 (20%)
RCC1_2 159..188 CDD:290274 9/28 (32%)
RCC1 175..233 CDD:278826 17/57 (30%)
RCC1_2 220..249 CDD:290274 12/28 (43%)
RCC1 236..286 CDD:278826 14/54 (26%)
RCC1 290..341 CDD:278826 15/51 (29%)
RCC1 345..395 CDD:278826 12/51 (24%)
RCC1_2 386..414 CDD:290274 9/27 (33%)
RCC1 402..449 CDD:278826 17/48 (35%)
HERC1XP_016878188.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.820

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