DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3862 and AT1G19880

DIOPT Version :9

Sequence 1:NP_608550.1 Gene:CG3862 / 33261 FlyBaseID:FBgn0031286 Length:454 Species:Drosophila melanogaster
Sequence 2:NP_173417.2 Gene:AT1G19880 / 838576 AraportID:AT1G19880 Length:538 Species:Arabidopsis thaliana


Alignment Length:421 Identity:97/421 - (23%)
Similarity:171/421 - (40%) Gaps:113/421 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   107 GETLFGSGLNTDSQLGFQ---VKGNPNDPANLDVIIYPTAIKLPRVQGETDEDMRVKSMSAGRA- 167
            ||.|| .|......:|.:   ::||         ::.||.:: |.|      .:.::.::.|.| 
plant    20 GELLF-CGATAWDIIGKRKGAMEGN---------LVSPTRLR-PLV------GVNIRFVATGCAS 67

  Fly   168 -HLVVLTQNGTIFTLGNNSYGQCGR-SIIEEERYSKSALIHRISQEDICGKEDEVVQVECGQDHS 230
             |.|.|...|..:|.|.|..||.|. .:|:.:|   ..::..:|:.       ::|:...|::|:
plant    68 FHCVALDVEGRCYTWGRNEKGQLGHGDMIQRDR---PTVVSGLSKH-------KIVKAAAGRNHT 122

  Fly   231 MFLTKKGRIYTCGWGADGQTGQGNYHTAGQITLIGGDVE--------KEKIVRLSCSSDCV--LA 285
            :.::..|:....||...||.|.|:....    .:..:||        .:::..::|.:|..  |:
plant   123 VVVSDDGQSLGFGWNKYGQLGLGSAKNG----FVSVEVESTPLPCVVSDEVTNVACGADFTVWLS 183

  Fly   286 LNEAGDAFGWGNSEYGQL---DDSE--LAETQINI-----PRALKLTKSIGK-IKDVAAGGSFCM 339
            ..|.......|..:||||   .|:|  :.::.:.:     ||...:....|: |..||.|.:..:
plant   184 STEGASILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLAGETIVKVACGTNHTV 248

  Fly   340 ALNDQGLVYTWGFGILGFGPFVEQTSK----PQHLLPPLFGRNDFSNETTVVSIG-----C---- 391
            |::..|.|||||||  |:|....:..|    |:.:  .:|.||:......::|.|     |    
plant   249 AVDKNGYVYTWGFG--GYGRLGHREQKDEWAPRRI--DVFQRNNVLPPNAILSAGSANSACTAGG 309

  Fly   392 GVFHM-GAVNSDGDLFM---------------------------------WGKNRFGHLGLG--H 420
            |..:| |.:.::||.:|                                 ||..::|.||.|  .
plant   310 GQLYMWGKIKNNGDDWMYPKPMMDLSGWNLRWMDSGSMHHFVGADSSCISWGHAQYGELGYGPNG 374

  Fly   421 KKDQFFPFKA-AING-KVTKVAYGVDHTIAL 449
            :|....|.|. .:.| .|..||.|..|::.:
plant   375 QKSSAAPKKVDMLEGMHVMGVACGFCHSMVI 405

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3862NP_608550.1 RCC1 43..99 CDD:278826
RCC1_2 159..188 CDD:290274 9/30 (30%)
RCC1 175..233 CDD:278826 13/58 (22%)
RCC1_2 220..249 CDD:290274 6/28 (21%)
RCC1 236..286 CDD:278826 12/59 (20%)
RCC1 290..341 CDD:278826 14/61 (23%)
RCC1 345..395 CDD:278826 19/62 (31%)
RCC1_2 386..414 CDD:290274 11/70 (16%)
RCC1 402..449 CDD:278826 18/83 (22%)
AT1G19880NP_173417.2 ATS1 38..384 CDD:227511 84/379 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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