DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3862 and AT5G19420

DIOPT Version :9

Sequence 1:NP_608550.1 Gene:CG3862 / 33261 FlyBaseID:FBgn0031286 Length:454 Species:Drosophila melanogaster
Sequence 2:NP_001190338.1 Gene:AT5G19420 / 832062 AraportID:AT5G19420 Length:1139 Species:Arabidopsis thaliana


Alignment Length:528 Identity:125/528 - (23%)
Similarity:208/528 - (39%) Gaps:141/528 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LGISRSYTAKAKRGVLAQDKSKIKEYSPKTTDSHEHRVYVWGFQETGALGLQTNVKKAKERYTEM 73
            |.:...|.:..|.||   ||:        .:|...:.|...||...|:..:  :|.......::.
plant   215 LRLHSPYESPPKNGV---DKA--------FSDMSLYAVPPKGFFPPGSATM--SVHSLSSGGSDT 266

  Fly    74 VHHPTR------LQFSNNNEITDVAAGYGFTVYAVNRDDGETL-----FGSGLNTDSQLGFQVKG 127
            :|...:      .:.|.::.|:..:.|.|       .|||:||     :|.|:. :..||   .|
plant   267 LHGHMKGMGMDAFRVSLSSAISSSSHGSG-------HDDGDTLGDVFMWGEGIG-EGVLG---GG 320

  Fly   128 NPNDPANLDV---IIYPTAIKLPRVQGETDEDMRVKSMSAGRAHLVVLTQNGTIFTLGNNSYGQC 189
            |....::|::   .:.|.|:       |:...:.|::::.|..|.|::|:.|..|:.|..|.|:.
plant   321 NHRVGSSLEIKMDSLLPKAL-------ESTIVLDVQNIACGGQHAVLVTKQGESFSWGEESEGRL 378

  Fly   190 GRSIIEEERYSKSALIHRISQEDICGKEDEVVQVECGQDHSMFLTKKGRIYTCGWGADGQTGQGN 254
            |..:....::.|  ||..::..:|     |:  |.||:.||..:|..|.:||.|.|..|..|.||
plant   379 GHGVDSNVQHPK--LIDALNTTNI-----EL--VACGEYHSCAVTLSGDLYTWGKGDFGILGHGN 434

  Fly   255 --------------------------YHT-----AGQITLIG---------GD-----VEKE--- 271
                                      |||     |||:...|         ||     :.:|   
plant   435 EVSHWVPKRVNFLMEGIHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVFIPREVDS 499

  Fly   272 ----KIVRLSC-----------------SSDCVLALNEAGDAFGWGNSEYGQLDDSELAETQINI 315
                :.||.:|                 ||:|     .:|..|.||:.:..:|...: .|.:: :
plant   500 LKGLRTVRAACGVWHTAAVVEVMVGSSSSSNC-----SSGKLFTWGDGDKSRLGHGD-KEPKL-V 557

  Fly   316 PRALKLTKSIGKIKDVAAGGSFCMALNDQGLVYTWGFGILGFGPFVEQTSKPQHLLPPLFGRNDF 380
            |..:..... .....||.|.|..:||...|.|||.|..:.|      |...| |....:..|.|.
plant   558 PTCVAALVE-PNFCQVACGHSLTVALTTSGHVYTMGSPVYG------QLGNP-HADGKVPTRVDG 614

  Fly   381 S-NETTVVSIGCGVFHMGAVNSDGDLFMWGKNRFGHLGLGHKKDQFFP--FKAAINGKVTKVAYG 442
            . :::.|..|.||.:|:..:.|..:::.|||...|.||.|...|:..|  .::..:.:|..:|.|
plant   615 KLHKSFVEEIACGAYHVAVLTSRTEVYTWGKGSNGRLGHGDADDRNSPTLVESLKDKQVKSIACG 679

  Fly   443 VDHTIALC 450
            .:.|.|:|
plant   680 SNFTAAVC 687

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3862NP_608550.1 RCC1 43..99 CDD:278826 10/61 (16%)
RCC1_2 159..188 CDD:290274 9/28 (32%)
RCC1 175..233 CDD:278826 16/57 (28%)
RCC1_2 220..249 CDD:290274 11/28 (39%)
RCC1 236..286 CDD:278826 25/118 (21%)
RCC1 290..341 CDD:278826 11/50 (22%)
RCC1 345..395 CDD:278826 15/50 (30%)
RCC1_2 386..414 CDD:290274 9/27 (33%)
RCC1 402..449 CDD:278826 13/48 (27%)
AT5G19420NP_001190338.1 PH_PLC_plant-like 57..164 CDD:270171
RCC1_2 348..377 CDD:290274 9/28 (32%)
RCC1 365..413 CDD:278826 16/56 (29%)
RCC1 416..466 CDD:278826 12/49 (24%)
RCC1 470..518 CDD:278826 9/47 (19%)
RCC1 534..582 CDD:278826 11/50 (22%)
RCC1 585..634 CDD:278826 16/55 (29%)
RCC1 639..686 CDD:278826 13/46 (28%)
FYVE 690..757 CDD:279674
Tup_N 906..956 CDD:285748
BRX_N 949..984 CDD:290432
BRX_assoc 990..1057 CDD:293233
BRX 1064..1118 CDD:285568
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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