DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3862 and AT5G12350

DIOPT Version :9

Sequence 1:NP_608550.1 Gene:CG3862 / 33261 FlyBaseID:FBgn0031286 Length:454 Species:Drosophila melanogaster
Sequence 2:NP_568268.3 Gene:AT5G12350 / 831110 AraportID:AT5G12350 Length:1075 Species:Arabidopsis thaliana


Alignment Length:526 Identity:115/526 - (21%)
Similarity:196/526 - (37%) Gaps:154/526 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 GISRSYT-----AKAKRGVLAQDKSKIKEYSPKTTDSHEHRVYVWGFQETGALGLQTNVKKAKER 69
            |:.::::     |...:|....|.:.|..:|..:...|.|         ...:|:..        
plant   193 GLDKAFSDMALYAVPPKGFYPSDSATISVHSGGSDSMHGH---------MRGMGMDA-------- 240

  Fly    70 YTEMVHHPTRLQFSNNNEITDVAAGYGFTVYAVNRDDGETL-----FGSGLNTDSQLGFQVKGNP 129
                      .:.|.::.::..:.|.|       .|||:.|     :|.|:. :..||   .||.
plant   241 ----------FRVSMSSAVSSSSHGSG-------HDDGDALGDVFIWGEGIG-EGVLG---GGNR 284

  Fly   130 NDPANLDV---IIYPTAIKLPRVQGETDEDMRVKSMSAGRAHLVVLTQNGTIFTLGNNSYGQCGR 191
            ...::.|:   .:.|.|:       |:...:.|::::.|..|.|::|:.|..|:.|..|.|:.|.
plant   285 RVGSSFDIKMDSLLPKAL-------ESTIVLDVQNIACGGQHAVLVTKQGESFSWGEESEGRLGH 342

  Fly   192 SIIEEERYSKSALIHRISQEDICGKEDEVVQVECGQDHSMFLTKKGRIYTCGWGADGQTGQGN-- 254
            .:  :....:..||..::..:|     |:  |.||:.||..:|..|.:||.|.|..|..|.||  
plant   343 GV--DSNIQQPKLIDALNTTNI-----EL--VACGEFHSCAVTLSGDLYTWGKGDFGVLGHGNEV 398

  Fly   255 ------------------------YHT-----AGQITLIG-------GDVEKEKI---------- 273
                                    |||     |||:...|       |..:|:.:          
plant   399 SHWVPKRVNFLLEGIHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDKKSVFIPREVDSLK 463

  Fly   274 ----VRLSC-----------------SSDCVLALNEAGDAFGWGNSEYGQLDDSELAETQINIPR 317
                ||.:|                 ||:|     .:|..|.||:.:.|:|.... .|.:: :|.
plant   464 GLRTVRAACGVWHTAAVVEVMVGSSSSSNC-----SSGKLFTWGDGDKGRLGHGN-KEPKL-VPT 521

  Fly   318 ALKLTKSIGKIKDVAAGGSFCMALNDQGLVYTWGFGILG-FGPFVEQTSKPQHLLPPLFGRNDFS 381
            .:..... .....||.|.|..:||...|.|||.|..:.| .|........|..:...|       
plant   522 CVAALVE-PNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNSHADGKTPNRVEGKL------- 578

  Fly   382 NETTVVSIGCGVFHMGAVNSDGDLFMWGKNRFGHLGLGHKKDQFFP--FKAAINGKVTKVAYGVD 444
            :::.|..|.||.:|:..:.|..:::.|||...|.||.|...|:..|  .::..:.:|..:|.|.:
plant   579 HKSFVEEIACGAYHVAVLTSRTEVYTWGKGSNGRLGHGDVDDRNSPTLVESLKDKQVKSIACGTN 643

  Fly   445 HTIALC 450
            .|.|:|
plant   644 FTAAVC 649

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3862NP_608550.1 RCC1 43..99 CDD:278826 5/55 (9%)
RCC1_2 159..188 CDD:290274 9/28 (32%)
RCC1 175..233 CDD:278826 15/57 (26%)
RCC1_2 220..249 CDD:290274 11/28 (39%)
RCC1 236..286 CDD:278826 24/118 (20%)
RCC1 290..341 CDD:278826 12/50 (24%)
RCC1 345..395 CDD:278826 13/50 (26%)
RCC1_2 386..414 CDD:290274 9/27 (33%)
RCC1 402..449 CDD:278826 13/48 (27%)
AT5G12350NP_568268.3 PH_PLC_plant-like 19..129 CDD:270171
RCC1_2 310..339 CDD:290274 9/28 (32%)
RCC1 327..375 CDD:278826 15/56 (27%)
RCC1 378..428 CDD:278826 12/49 (24%)
RCC1 432..480 CDD:278826 8/47 (17%)
RCC1 496..544 CDD:278826 12/50 (24%)
RCC1 547..596 CDD:278826 14/55 (25%)
RCC1 601..648 CDD:278826 13/46 (28%)
FYVE 652..719 CDD:279674
BRX_N 911..946 CDD:290432
BRX 1006..1060 CDD:285568
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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