DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3862 and AT3G53830

DIOPT Version :9

Sequence 1:NP_608550.1 Gene:CG3862 / 33261 FlyBaseID:FBgn0031286 Length:454 Species:Drosophila melanogaster
Sequence 2:NP_001327553.1 Gene:AT3G53830 / 824550 AraportID:AT3G53830 Length:500 Species:Arabidopsis thaliana


Alignment Length:526 Identity:117/526 - (22%)
Similarity:183/526 - (34%) Gaps:171/526 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 VYVWGFQETGALGLQTNVKKAKERYTEMVHHPTRLQFSNNNEITDV-AAGYGFTV---------- 99
            ||:.|:....|......:.....|.:..||        ..:...|| ..|.||.:          
plant    19 VYMSGYLPGAASEKSPILSPVPVRLSAAVH--------GGDSWKDVCGGGCGFAMAISEKGKLIT 75

  Fly   100 YAVNRDDGETLFGSGLNTDSQLGFQVKGNPNDPANLDVIIYPTAIKLPRVQGETDEDMRVKSMSA 164
            :....|:|::...||.:          |...:|       :|...:.|.||.           |:
plant    76 WGSTDDEGQSYVASGKH----------GETPEP-------FPLPTEAPVVQA-----------SS 112

  Fly   165 GRAHLVVLTQNGTIFT------------LGNNSYGQCGRSIIEEERYSKSALI------------ 205
            |.||..|:|:.|..||            :|....|...:..|..:.:..|.:|            
plant   113 GWAHCAVVTETGEAFTWGWKECIPSKDPVGKQQSGSSEQGDIGWDIFGCSVVIFLLLMDMVTFSI 177

  Fly   206 ----------------------HRISQEDICGK-----EDE------------------------ 219
                                  .::.:|.:..:     :||                        
plant   178 VIVSPASQGSNAASGTTLQNENQKVGEESVKRRRVSTAKDETEGHTSGGDFFATTPSLVSVGLGV 242

  Fly   220 -VVQVECGQDHSMFLTKKGRIYTCGWGADGQTGQGNY-------HTAGQITLIGGDVEKEKIVR- 275
             :..|..|..|::.|:..|:|:..|:|.:||.|.|:.       |....:..||...|:..|:. 
plant   243 RITSVATGGRHTLALSDLGQIWGWGYGGEGQLGLGSRIKMVSSPHLIPCLESIGSGKERSFILHQ 307

  Fly   276 --------------------LSCSSDCVLALNEAGD--AFGWGNSEYGQLDDSELAETQINIPRA 318
                                :||......|:.:||.  .||||  .|||..... ...|:. |.|
plant   308 GGTTTTSAQASREPGQYIKAISCGGRHSAAITDAGGLITFGWG--LYGQCGHGN-TNDQLR-PMA 368

  Fly   319 LKLTKSIGKIKDVAAGGSFCMALNDQGLVYTWG---FGILGFGPFVEQTSKPQHLLPPLF-GRND 379
            :...||: :::.||||....:.::..|.||.:|   ||.||.|      :....:||.|. |:|.
plant   369 VSEVKSV-RMESVAAGLWHTICISSDGKVYAFGGNQFGQLGTG------TDHAEILPRLLDGQNL 426

  Fly   380 FSNETTVVSIGCGVFHMGAVNSDGDLFMWGKNRFGHLGLGHKKDQFFPFKAAING-KVTKVAYGV 443
            .......||  ||..|...:..||.|..||.|::|.||||...|:..|.:..::| ::.|||.|.
plant   427 EGKHAKAVS--CGARHSAVLAEDGQLLCWGWNKYGQLGLGDTNDRNIPTQVQLDGCRLRKVACGW 489

  Fly   444 DHTIAL 449
            .||:.|
plant   490 WHTLLL 495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3862NP_608550.1 RCC1 43..99 CDD:278826 12/53 (23%)
RCC1_2 159..188 CDD:290274 10/40 (25%)
RCC1 175..233 CDD:278826 14/133 (11%)
RCC1_2 220..249 CDD:290274 8/28 (29%)
RCC1 236..286 CDD:278826 15/77 (19%)
RCC1 290..341 CDD:278826 17/52 (33%)
RCC1 345..395 CDD:278826 18/53 (34%)
RCC1_2 386..414 CDD:290274 11/27 (41%)
RCC1 402..449 CDD:278826 20/47 (43%)
AT3G53830NP_001327553.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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