DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3862 and AT3G15430

DIOPT Version :9

Sequence 1:NP_608550.1 Gene:CG3862 / 33261 FlyBaseID:FBgn0031286 Length:454 Species:Drosophila melanogaster
Sequence 2:NP_001325716.1 Gene:AT3G15430 / 820782 AraportID:AT3G15430 Length:488 Species:Arabidopsis thaliana


Alignment Length:343 Identity:79/343 - (23%)
Similarity:139/343 - (40%) Gaps:76/343 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   112 GSGLNTDSQLGFQVKGNPNDPANLDVIIYPTAIKLPRVQGETDEDMRVKSMSAGRAHLVVLTQNG 176
            |.||.|..:|....:||.....:....:..::..:...||:       ..::.|:.| .:|..|.
plant    73 GMGLTTQKELFANCEGNWKRLFSFLQSVEQSSDMVETSQGK-------MQIATGKYH-TLLINNS 129

  Fly   177 TIFTLGNNSYGQCGRSIIEEERYSKSALIHRISQEDICGKED---------------EVVQVECG 226
            .:::        ||.|:       ...|.|        |.|.               :|.||...
plant   130 KVYS--------CGVSL-------SGVLAH--------GSETTQCVAFTPIEFPFPAQVAQVSAT 171

  Fly   227 QDHSMFLTKKGRIYTCGWGADGQTGQGNYHTAGQITLIGGDVEKEKIVRLSCSSDC--------- 282
            |:||.|:.:.|::.||        |..:.|..|.:. ....:.:.|:|.....:.|         
plant   172 QNHSAFVLQSGQVLTC--------GDNSSHCCGHLD-TSRPIFRPKLVEALKGTPCKQVAAGLHF 227

  Fly   283 VLALNEAGDAFGWGNSEYGQLDDSELAETQINIPRALKLTKSIGKIKDVAAGGSFCMALNDQGLV 347
            .:.|:..|.|:..|::.:|||...:..:..  :|:.::..|:||.:..:|||.|:.:|:...|.|
plant   228 TVFLSREGHAYTCGSNTHGQLGHGDTLDRP--VPKVVEFLKTIGPVVQIAAGPSYVLAVTQDGSV 290

  Fly   348 YTWGFG---ILGFGPFVEQTSKPQHLLPPLFGRNDFSNETTVVSIGCGVFHMGAVNSDGDLFMWG 409
            |::|.|   .||.|   ||..:.|..:...|.|....    ::.:..|..|..|::|:|.::.||
plant   291 YSFGSGSNFCLGHG---EQQDELQPRVIQAFKRKGIH----ILRVSAGDEHAVALDSNGRVYTWG 348

  Fly   410 KNRFGHLGLGHKKDQFFP 427
            |...|.||.|.:.|:..|
plant   349 KGYCGALGHGDENDKITP 366

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3862NP_608550.1 RCC1 43..99 CDD:278826
RCC1_2 159..188 CDD:290274 4/28 (14%)
RCC1 175..233 CDD:278826 14/72 (19%)
RCC1_2 220..249 CDD:290274 10/28 (36%)
RCC1 236..286 CDD:278826 9/58 (16%)
RCC1 290..341 CDD:278826 14/50 (28%)
RCC1 345..395 CDD:278826 14/52 (27%)
RCC1_2 386..414 CDD:290274 8/27 (30%)
RCC1 402..449 CDD:278826 10/26 (38%)
AT3G15430NP_001325716.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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