DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3862 and AT3G15430

DIOPT Version :10

Sequence 1:NP_608550.1 Gene:CG3862 / 33261 FlyBaseID:FBgn0031286 Length:454 Species:Drosophila melanogaster
Sequence 2:NP_566512.1 Gene:AT3G15430 / 820782 AraportID:AT3G15430 Length:488 Species:Arabidopsis thaliana


Alignment Length:343 Identity:79/343 - (23%)
Similarity:139/343 - (40%) Gaps:76/343 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   112 GSGLNTDSQLGFQVKGNPNDPANLDVIIYPTAIKLPRVQGETDEDMRVKSMSAGRAHLVVLTQNG 176
            |.||.|..:|....:||.....:....:..::..:...||:       ..::.|:.| .:|..|.
plant    73 GMGLTTQKELFANCEGNWKRLFSFLQSVEQSSDMVETSQGK-------MQIATGKYH-TLLINNS 129

  Fly   177 TIFTLGNNSYGQCGRSIIEEERYSKSALIHRISQEDICGKED---------------EVVQVECG 226
            .:::        ||.|:       ...|.|        |.|.               :|.||...
plant   130 KVYS--------CGVSL-------SGVLAH--------GSETTQCVAFTPIEFPFPAQVAQVSAT 171

  Fly   227 QDHSMFLTKKGRIYTCGWGADGQTGQGNYHTAGQITLIGGDVEKEKIVRLSCSSDC--------- 282
            |:||.|:.:.|::.||        |..:.|..|.:. ....:.:.|:|.....:.|         
plant   172 QNHSAFVLQSGQVLTC--------GDNSSHCCGHLD-TSRPIFRPKLVEALKGTPCKQVAAGLHF 227

  Fly   283 VLALNEAGDAFGWGNSEYGQLDDSELAETQINIPRALKLTKSIGKIKDVAAGGSFCMALNDQGLV 347
            .:.|:..|.|:..|::.:|||...:..:..  :|:.::..|:||.:..:|||.|:.:|:...|.|
plant   228 TVFLSREGHAYTCGSNTHGQLGHGDTLDRP--VPKVVEFLKTIGPVVQIAAGPSYVLAVTQDGSV 290

  Fly   348 YTWGFG---ILGFGPFVEQTSKPQHLLPPLFGRNDFSNETTVVSIGCGVFHMGAVNSDGDLFMWG 409
            |::|.|   .||.|   ||..:.|..:...|.|....    ::.:..|..|..|::|:|.::.||
plant   291 YSFGSGSNFCLGHG---EQQDELQPRVIQAFKRKGIH----ILRVSAGDEHAVALDSNGRVYTWG 348

  Fly   410 KNRFGHLGLGHKKDQFFP 427
            |...|.||.|.:.|:..|
plant   349 KGYCGALGHGDENDKITP 366

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3862NP_608550.1 RCC1 43..99 CDD:395335
ATS1 89..449 CDD:444065 79/343 (23%)
AT3G15430NP_566512.1 F-box 10..58 CDD:425796
ATS1 115..474 CDD:444065 70/294 (24%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.