DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3862 and herc5.2

DIOPT Version :9

Sequence 1:NP_608550.1 Gene:CG3862 / 33261 FlyBaseID:FBgn0031286 Length:454 Species:Drosophila melanogaster
Sequence 2:XP_005160175.1 Gene:herc5.2 / 794323 ZFINID:ZDB-GENE-090311-16 Length:987 Species:Danio rerio


Alignment Length:305 Identity:77/305 - (25%)
Similarity:130/305 - (42%) Gaps:65/305 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 VKSMSAGRAHLVVLTQNG--TIFTLGNNSYGQCGRSIIEEERYSKSALIHRISQEDICGKEDEVV 221
            |:.||||:. .|...::|  ::..|.:....|.|                ::.|.|:  |.:::.
Zfish    37 VQDMSAGKT-FVGFIRDGKVSVLRLRDEDCNQDG----------------KLKQLDL--KREKIR 82

  Fly   222 QVECGQDHSMFLTKKGRI-----YTCGWGADGQTGQGNYHTAGQITLIGGDVEKEKIVRLSCSSD 281
            .:.||:|.::.|...|::     ||......|                   ::..|:::::|...
Zfish    83 SIVCGEDGAVLLADGGKVLLMDKYTVCRPLKG-------------------LDNTKVIQIACGDQ 128

  Fly   282 CVLALNEAGDAFGWGNSEYGQLDDSELAETQ--INIPRALKLTKSIGKIKDVAAGGSFCMALNDQ 344
            ..:||:..|..|.||.:.:|||.   |.:.|  |..|:.|:....| .:..::|||:....|:..
Zfish   129 HSVALSNDGQLFVWGENAHGQLG---LRKEQALIQSPQHLQSLCGI-PVAQISAGGNHSFVLSLS 189

  Fly   345 GLVYTWG---FGILGFGPFVEQTSKPQHLLPPLFGRNDFSNETTVVSIGCGVFHMGAVNSDGDLF 406
            |:|:.||   .|.||.|...::      .:|.:.  ...|.:.| |||.||..|...::..|.:|
Zfish   190 GVVFGWGSNSAGQLGLGDTTDR------FVPTIV--KSLSGKKT-VSISCGGEHTATLSKGGTVF 245

  Fly   407 MWGKNRFGHLGLGHKKDQFFPFKAA--INGKVTKVAYGVDHTIAL 449
            .:|...||.||....||:..|...|  ...||::|..|..||:.|
Zfish   246 TFGSGGFGQLGHNSLKDEHHPRLVAELWGSKVSQVTCGRHHTLVL 290

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3862NP_608550.1 RCC1 43..99 CDD:278826
RCC1_2 159..188 CDD:290274 8/30 (27%)
RCC1 175..233 CDD:278826 10/59 (17%)
RCC1_2 220..249 CDD:290274 7/33 (21%)
RCC1 236..286 CDD:278826 6/54 (11%)
RCC1 290..341 CDD:278826 16/52 (31%)
RCC1 345..395 CDD:278826 16/52 (31%)
RCC1_2 386..414 CDD:290274 9/27 (33%)
RCC1 402..449 CDD:278826 17/48 (35%)
herc5.2XP_005160175.1 RCC1_2 120..149 CDD:290274 7/28 (25%)
RCC1 136..186 CDD:278826 16/53 (30%)
RCC1 189..238 CDD:278826 17/57 (30%)
RCC1 242..290 CDD:278826 17/47 (36%)
RCC1 296..347 CDD:278826
HECTc 649..985 CDD:294058
HECTc 678..984 CDD:214523
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.