DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3862 and AT4G14368

DIOPT Version :9

Sequence 1:NP_608550.1 Gene:CG3862 / 33261 FlyBaseID:FBgn0031286 Length:454 Species:Drosophila melanogaster
Sequence 2:NP_001154232.2 Gene:AT4G14368 / 7922506 AraportID:AT4G14368 Length:1106 Species:Arabidopsis thaliana


Alignment Length:524 Identity:113/524 - (21%)
Similarity:191/524 - (36%) Gaps:152/524 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 VWGFQETGALGLQTNVKKAKERYTEMVHHPT-----------RLQFSNNNEITDVAAGYGFTVYA 101
            || |....:|..|...|:||....|:..|.:           .:.|:.||      ...|.|...
plant   119 VW-FAGLKSLIRQNRNKQAKSEIPEVSIHDSDCFSTGRPSTASIDFAPNN------TRRGRTSID 176

  Fly   102 VNRDDGETLFGS---GLNTDSQL-----GFQVK-----------GNPNDPANL------------ 135
            :...:..|.|||   |....:.|     ||::.           ..|:|..:|            
plant   177 LGIQNSPTKFGSSDVGYERGNMLRPSTDGFRISVSSTPSCSTGTSGPDDIESLGDVYVWGEVWSD 241

  Fly   136 ----DVIIYPTAIK----LPRVQGETDEDMRVKSMSAGRAHLVVLTQNGTIFTLGNNSYGQCGRS 192
                |.::..|.:|    :|:.. |::..:.|..::.|..|:.::|:.|.:||....:.|:.|..
plant   242 GISPDGVVNSTTVKIDVLIPKPL-ESNVVLDVHQIACGVRHIALVTRQGEVFTWEEEAGGRLGHG 305

  Fly   193 IIEEERYSKSALIHRISQEDI----CGKED----------------------------------- 218
            |  :....:..|:..::..:|    ||:..                                   
plant   306 I--QVDVCRPKLVEFLALTNIDFVACGEYHTCAVSTSGDLFTWGDGIHNVGLLGHGSDLSHWIPK 368

  Fly   219 ---------EVVQVECGQDHSMFLTKKGRIYTCGWGADGQTGQGNYHTAG---QITLIGGDVEKE 271
                     :|:.|.||..||...|..|:::|.|.||.|..|.|:..:..   ::.::.|    .
plant   369 RVSGPVEGLQVLSVACGTWHSALATANGKLFTFGDGAFGVLGHGDRESVSYPKEVKMLSG----L 429

  Fly   272 KIVRLSC----SSDCVLALNEAGDA------FGWGNSEYGQLDDSELAETQINIPRALKLTKSIG 326
            |.::::|    :...|..:|:.|.:      |.||:.:..:|.... .||.:       |...:.
plant   430 KTLKVACGVWHTVAIVEVMNQTGTSTSSRKLFTWGDGDKNRLGHGN-KETYL-------LPTCVS 486

  Fly   327 KIKD-----VAAGGSFCMALNDQGLVYTWG---FGILGFGPFVEQTSKPQHLLPPLFGRNDFSNE 383
            .:.|     :|.|.:|.:||...|.|:|.|   .|.||       :|.....||.|.  .|....
plant   487 SLIDYNFNQIACGHTFTVALTTSGHVFTMGGTSHGQLG-------SSNSDGKLPCLV--QDRLVG 542

  Fly   384 TTVVSIGCGVFHMGAVNSDGDLFMWGKNRFGHLGLGHKKDQFFP--FKAAINGKVTKVAYGVDHT 446
            ..|..|.||..|:..:.|..::|.|||...|.||.|.|.|:..|  .:|.....|..::.|.:.|
plant   543 EFVEEISCGDHHVAVLTSRSEVFTWGKGSNGRLGHGDKDDRKTPTLVEALRERHVKSISCGSNFT 607

  Fly   447 IALC 450
            .::|
plant   608 SSIC 611

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3862NP_608550.1 RCC1 43..99 CDD:278826 14/61 (23%)
RCC1_2 159..188 CDD:290274 7/28 (25%)
RCC1 175..233 CDD:278826 16/105 (15%)
RCC1_2 220..249 CDD:290274 12/28 (43%)
RCC1 236..286 CDD:278826 12/56 (21%)
RCC1 290..341 CDD:278826 12/61 (20%)
RCC1 345..395 CDD:278826 16/52 (31%)
RCC1_2 386..414 CDD:290274 10/27 (37%)
RCC1 402..449 CDD:278826 15/48 (31%)
AT4G14368NP_001154232.2 PH_PLC_plant-like 17..128 CDD:270171 3/9 (33%)
RCC1 289..337 CDD:278826 10/49 (20%)
RCC1 340..391 CDD:278826 6/50 (12%)
RCC1 395..444 CDD:278826 11/52 (21%)
RCC1 459..506 CDD:278826 11/54 (20%)
RCC1 509..558 CDD:278826 17/57 (30%)
RCC1 563..607 CDD:278826 14/43 (33%)
FYVE 613..680 CDD:214499
DASH_Spc19 <812..885 CDD:285487
BRX_N 853..887 CDD:290432
BRX 964..>994 CDD:285568
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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