DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3862 and rpgr

DIOPT Version :9

Sequence 1:NP_608550.1 Gene:CG3862 / 33261 FlyBaseID:FBgn0031286 Length:454 Species:Drosophila melanogaster
Sequence 2:XP_031752069.1 Gene:rpgr / 733454 XenbaseID:XB-GENE-982274 Length:1225 Species:Xenopus tropicalis


Alignment Length:361 Identity:95/361 - (26%)
Similarity:154/361 - (42%) Gaps:86/361 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   152 ETDEDMRVKSMSAGRAHLVVLTQNGTIFTLGNNSYGQCGRSIIEEERYSKSALIHRISQEDICGK 216
            :.|:..|:   |.|..|.|::|.||.::..|:|::||.|  :......||...:..:       |
 Frog    35 KNDKPARI---SCGDEHTVLVTGNGKLYVFGSNNWGQLG--VEAGSAISKPTCVKAL-------K 87

  Fly   217 EDEVVQVECGQDHSMFLTKKGRIYTCGWGADGQTGQGNYHTAGQITL--IGGDVEKEKIVRLSCS 279
            .::||...||:.|::..|::|::|:.|..::||.|.|:  |||:.:.  |.....:.||.:||..
 Frog    88 SEKVVLAACGRHHTLVYTEQGKLYSSGGNSEGQLGLGD--TAGRTSFQEISFFTAQYKIKQLSAG 150

  Fly   280 SDCVLALNEAGDAFGWGNSEYGQL----------------------------------DDSEL-- 308
            |:...||...|..|.||::..|||                                  .|.||  
 Frog   151 SNMSAALTVDGKLFMWGDNSEGQLGLEKGTIYCTPQKVDTGKPIAWISCGYYHSAFVTQDGELYT 215

  Fly   309 ----AETQINIP-----------RALKLTKSIGKIKDVAAGGSFCMALNDQGLVYTWG---FGIL 355
                ...::.:|           |.|.|:   ||:..|:.||...:|:.::. |||:|   ||.|
 Frog   216 FGEPENGKLGLPPDKIKKHKKPQRVLGLS---GKVTMVSCGGEHTIAVTEKE-VYTFGLGQFGQL 276

  Fly   356 GFGPFVEQTSKPQHLLPPLFGRNDFSNETTVVSIGCGVFHMGAVNSDGDLFMWGKNRFGHLGLGH 420
            |.|.|:.:|..|:.:        |...:..:..:.||..|...:...|.|:.:|..|.|.||||.
 Frog   277 GHGTFIFETHIPKAV--------DALTKKKIRYVTCGENHTAIITEKGLLYTFGDGRHGKLGLGE 333

  Fly   421 KK--DQFFPFKAA--INGKVTKVAYGVDHTIALCKP 452
            :.  :||.|...:  :...|..||.|..|.:....|
 Frog   334 ENFTNQFVPILCSNFLKFTVQSVACGGCHMLVFATP 369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3862NP_608550.1 RCC1 43..99 CDD:278826
RCC1_2 159..188 CDD:290274 9/28 (32%)
RCC1 175..233 CDD:278826 15/57 (26%)
RCC1_2 220..249 CDD:290274 9/28 (32%)
RCC1 236..286 CDD:278826 16/51 (31%)
RCC1 290..341 CDD:278826 19/101 (19%)
RCC1 345..395 CDD:278826 15/52 (29%)
RCC1_2 386..414 CDD:290274 7/27 (26%)
RCC1 402..449 CDD:278826 17/50 (34%)
rpgrXP_031752069.1 ATS1 <42..334 CDD:227511 84/317 (26%)
RCC1 315..362 CDD:395335 16/46 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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