DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3862 and Rcbtb1

DIOPT Version :9

Sequence 1:NP_608550.1 Gene:CG3862 / 33261 FlyBaseID:FBgn0031286 Length:454 Species:Drosophila melanogaster
Sequence 2:NP_001347539.1 Gene:Rcbtb1 / 71330 MGIID:1918580 Length:531 Species:Mus musculus


Alignment Length:333 Identity:80/333 - (24%)
Similarity:143/333 - (42%) Gaps:57/333 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 AVNRDDGETLFGSGLNTDSQLGFQVKGNPNDPANLDVIIYPTAIKLPRVQGETDEDMRVKSMSAG 165
            |:...|.:.:|..|||..:.||.....:...|..|:.:.                ..::||:|.|
Mouse    34 AIYVTDNDEVFVFGLNYSNCLGTGDNQSTLVPKKLEALC----------------GKKIKSLSYG 82

  Fly   166 RA-HLVVLTQNGTIFTLGNNSYGQCGRSIIEEERYSKSALIHRISQEDICGK--EDEVVQVECGQ 227
            .. |:::.|::|.::..|:|.|.|.|.....:          .|:...:|..  ..:|::|.||.
Mouse    83 SGPHVLLTTEDGVVYAWGHNGYSQLGNGTTNQ----------GIAPVQVCTNLLIKQVIEVACGS 137

  Fly   228 DHSMFLTKKGRIYTCGWGADGQTGQGNYHTAGQIT--LIGGDVEKEKIVRLSCSSDCVLALNEAG 290
            .|||.|...|.::..|:...||.|.|:  ||.|.|  .:...:..:::|.::|.....:|:.::|
Mouse   138 HHSMALAADGELFAWGYNNCGQVGSGS--TANQPTPRKVTNCLHTKRVVNIACGQTSSMAVLDSG 200

  Fly   291 DAFGWGNSEYGQL----DDSELAETQINIPRALKLTKSIGKIKDVAAGGSFCMALNDQGLVYTWG 351
            :.:|||.:..|||    :.::|...::.....:       .:..:..|.:..:||.|:||:|.||
Mouse   201 EVYGWGYNGNGQLGLGNNGNQLTPVRVAALHGM-------CVNQIVCGYAHTLALTDEGLLYAWG 258

  Fly   352 ---FGILGFGPFVEQTSKPQHLLPPLFGRNDFSNETTVVSIGCGVFHMGAVNSD-GDLFMWGKNR 412
               :|.||       |....:||.|.  :.....|..:....|...|..|..:. |.::|||:.|
Mouse   259 ANTYGQLG-------TGSKNNLLSPT--QIMVEKERVIEIAACHSTHTSAAKTQGGHVYMWGQCR 314

  Fly   413 FGHLGLGH 420
            ...:.|.|
Mouse   315 GQSVILPH 322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3862NP_608550.1 RCC1 43..99 CDD:278826
RCC1_2 159..188 CDD:290274 10/29 (34%)
RCC1 175..233 CDD:278826 15/59 (25%)
RCC1_2 220..249 CDD:290274 10/28 (36%)
RCC1 236..286 CDD:278826 12/51 (24%)
RCC1 290..341 CDD:278826 9/54 (17%)
RCC1 345..395 CDD:278826 14/52 (27%)
RCC1_2 386..414 CDD:290274 8/28 (29%)
RCC1 402..449 CDD:278826 7/20 (35%)
Rcbtb1NP_001347539.1 RCC1 1 40..91 13/66 (20%)
ATS1 43..>316 CDD:227511 76/316 (24%)
RCC1 2 93..145 16/61 (26%)
RCC1 3 147..198 13/52 (25%)
RCC1 4 199..250 11/57 (19%)
RCC1 5 252..302 16/58 (28%)
RCC1 6 304..356 7/19 (37%)
BTB_POZ_RCBTB1_CLLD7 350..466 CDD:349662
BACK_RCBTB1 466..531 CDD:350603
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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