DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3862 and rpgra

DIOPT Version :10

Sequence 1:NP_608550.1 Gene:CG3862 / 33261 FlyBaseID:FBgn0031286 Length:454 Species:Drosophila melanogaster
Sequence 2:XP_021334464.2 Gene:rpgra / 571327 ZFINID:ZDB-GENE-070912-423 Length:1698 Species:Danio rerio


Alignment Length:412 Identity:106/412 - (25%)
Similarity:161/412 - (39%) Gaps:113/412 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 KSKIKEYSPKTT-------------DSH------EHRVYVWGFQETGALGLQTNVKKAKERYTEM 73
            ||||....|...             .||      :.|::|:|....|.||||......|      
Zfish    18 KSKIANNVPSRLWLKSDIPVHISCGQSHSAFVTEQGRLFVFGDNNRGQLGLQIKGPVTK------ 76

  Fly    74 VHHPTRLQFSNNNEITDVAAGYGFTVYAVNRDDGETLFGSGLNTDSQLGFQVKGNPNDPANLDVI 138
               |..::.........||.|...|:  |:...||.|...| |:|.|||.   |:.||       
Zfish    77 ---PVCVKVLKGERAQSVACGTDHTL--VSTSQGEILAAGG-NSDGQLGL---GHCND------- 125

  Fly   139 IYPTAIKLPRVQGETDEDMRVKSMSAGRAHLVVLTQNGTIFTLGNNSYGQCG-----RSIIEEER 198
                :|...|::...|. ..:|.:|||......||::|.:|..|:||.||.|     .:::.:| 
Zfish   126 ----SISFQRLRPFCDY-APIKLLSAGDHTSAALTEDGRLFLWGDNSAGQLGFGNDSHALLPKE- 184

  Fly   199 YSKSALIHRISQEDICGKEDEVVQVECGQDHSMFLTKKGRIYTCGWGADGQTGQGNY----HTAG 259
            .:....||.:|               ||..||..:|..|.:|:.|..|||:.|...:    |:..
Zfish   185 LNMGQSIHWVS---------------CGYRHSALVTDSGDVYSFGESADGRLGLSAHQLANHSYP 234

  Fly   260 QITLIGGDVEK-EKIVRLSCSSDCVLALNEAGDAFGWGNSEYGQLDDSEL---AETQINIPRALK 320
            |      .||. ..:::::|.....|||.| .:.:.:|..|:|||....|   |::.:.:....|
Zfish   235 Q------RVESLHSVLQVACGGKHTLALTE-DELYCFGGGEFGQLGLGTLVFVADSPVAVGHFRK 292

  Fly   321 LTKSIGKIKDVAAGGSFCMALNDQGLVYTWGFGILGFGPFVEQTSKPQHLLPPLFGRNDFSNETT 385
                 |::..|..|......:.|.||:||:|.|..|         |..|      |..:|:|:.|
Zfish   293 -----GRVTHVTCGEQHSALITDSGLLYTFGDGRHG---------KLGH------GDENFTNQFT 337

  Fly   386 -----------VVSIGCGVFHM 396
                       |:::.||..||
Zfish   338 PTVCQRFFEYSVMTVACGSSHM 359

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3862NP_608550.1 RCC1 43..99 CDD:395335 13/55 (24%)
ATS1 89..449 CDD:444065 89/332 (27%)
rpgraXP_021334464.2 ATS1 37..358 CDD:444065 99/390 (25%)

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