DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3862 and rccd1

DIOPT Version :9

Sequence 1:NP_608550.1 Gene:CG3862 / 33261 FlyBaseID:FBgn0031286 Length:454 Species:Drosophila melanogaster
Sequence 2:XP_009296664.1 Gene:rccd1 / 567613 ZFINID:ZDB-GENE-030131-3552 Length:312 Species:Danio rerio


Alignment Length:233 Identity:64/233 - (27%)
Similarity:92/233 - (39%) Gaps:56/233 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   256 HTAGQITLIGGDVE---------KEKIVRLSCSSDCVLALNEAGDAFGWGNSEYGQLDDSELAET 311
            |||....:.||.|:         |...|.|...|:..|.|...|..:.||:..:|||....|  |
Zfish    65 HTAALPLVSGGFVQHKPPFFHPLKLCAVSLVLGSEHALLLTADGTLYSWGSGSHGQLGHGAL--T 127

  Fly   312 QINIPRALKLTKSIGKIKDVAAGGSFCMALNDQGLVYTWGF---GILGF-----------GPFVE 362
            .:..|:|::....: .||.||||.....|::..|.:|.||:   |.||.           |....
Zfish   128 SLEDPQAVEALWGV-PIKAVAAGNWHSAAVSSGGDLYMWGWNESGQLGLPSRGLEEEKRRGNGSG 191

  Fly   363 QTSKPQH--------------LLPPLFGRNDFSNETTVVSIGCGVFHMGAVNSDGDLFMWGKNRF 413
            ...:|.:              ..|.|.   |.:|.:.:..|.||..|..||.|.|||:.||..::
Zfish   192 NDDQPMNTDEKSQTDVFISIQAFPALV---DIANMSEISRISCGSRHTAAVTSAGDLYTWGWGQY 253

  Fly   414 GHLGLG--HKKDQFFPFKAAINGKVTKVAYGVDHTIAL 449
            |.||.|  |..|:           .|.|.|...|::::
Zfish   254 GQLGHGTEHSTDE-----------PTPVDYFSSHSLSV 280

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3862NP_608550.1 RCC1 43..99 CDD:278826
RCC1_2 159..188 CDD:290274
RCC1 175..233 CDD:278826
RCC1_2 220..249 CDD:290274
RCC1 236..286 CDD:278826 11/38 (29%)
RCC1 290..341 CDD:278826 16/50 (32%)
RCC1 345..395 CDD:278826 16/77 (21%)
RCC1_2 386..414 CDD:290274 12/27 (44%)
RCC1 402..449 CDD:278826 15/48 (31%)
rccd1XP_009296664.1 RCC1_2 92..120 CDD:290274 8/27 (30%)
RCC1 107..156 CDD:278826 16/51 (31%)
RCC1_2 143..172 CDD:290274 11/28 (39%)
RCC1 160..239 CDD:278826 17/81 (21%)
RCC1_2 226..255 CDD:290274 12/28 (43%)
RCC1 243..292 CDD:278826 15/49 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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