DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3862 and herc2

DIOPT Version :10

Sequence 1:NP_608550.1 Gene:CG3862 / 33261 FlyBaseID:FBgn0031286 Length:454 Species:Drosophila melanogaster
Sequence 2:XP_073810441.1 Gene:herc2 / 558479 ZFINID:ZDB-GENE-070718-6 Length:4831 Species:Danio rerio


Alignment Length:420 Identity:108/420 - (25%)
Similarity:180/420 - (42%) Gaps:72/420 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 RVYVWGFQETGALGLQTNVKKAKERYTEMVHHPTRLQFSNNNEITDVAAGYGFTVYAVNRDDGET 109
            :|:|||..:...||   .:|.:|      :..|:..:..:...:..||.| ..:::||..:.  .
Zfish  2954 KVFVWGLNDKDQLG---GLKGSK------IKVPSFSETLSALNVVQVAGG-SKSLFAVTAEG--K 3006

  Fly   110 LFGSGLNTDSQLGFQVKGNPNDPANLDVIIYPTAIKLPR-VQGETDEDMRVKSMSAGRAHLVVLT 173
            ::..|..|:.:||..:...              .|.:|| :...::..::..::.:|..|.:.||
Zfish  3007 VYACGEATNGRLGLGLSSG--------------TIPIPRQISALSNYVVKKVAVHSGGRHAMALT 3057

  Fly   174 QNGTIFTLGNNSYGQCGRSIIEEERYSKSALIHRISQEDICGKEDEVVQVECGQDHSMFLTKKGR 238
            .:|.:|:.|....|:.|.  .......|..||..:       |...:..:.||..||..:|..|.
Zfish  3058 VDGKVFSWGEGDDGKLGH--FSRMNCDKPRLIEAL-------KTKRIRDIACGSSHSAAITSSGE 3113

  Fly   239 IYTCGWGADGQTGQGNYHTAGQI------TLIGGDVEKEKIVRLSCSS-DC-VLALNEAGDAFGW 295
            :|:.|.|..|:.|.|:..|  |:      .|:|     .::|:::|.| |. .|||.:.|..|.|
Zfish  3114 LYSWGLGEYGRLGHGDNTT--QLRPKLVKVLLG-----HRVVQVACGSRDAQTLALTDEGMVFSW 3171

  Fly   296 GNSEYGQLDDSELAETQINIPRALKLTKSIGKIKDVAAGGSFCMALNDQGLVYTWGFG---ILGF 357
            |:.::|:|...  .....|||:.::.....| :..:..|..|.:||...|:|:|||.|   .||.
Zfish  3172 GDGDFGKLGRG--GSEGCNIPQNIERLNGQG-VCQIECGAQFSLALTKSGVVWTWGKGDYFRLGH 3233

  Fly   358 GPFVEQTSKPQHLLPPLFGRNDFSNETTVVSIGCGVFHMGAVNSDGDLFMWGKNRFGHLGLGHKK 422
            |..| ...||| ::..|.|:.       :|.:..|..|..||...|.:|.||.|..|..|.|...
Zfish  3234 GTDV-HVRKPQ-MVEGLRGKK-------IVHVAVGALHCLAVTETGQVFAWGDNDHGQQGNGTTT 3289

  Fly   423 DQFFPFKAAING----KVTKVAYGVDHTIA 448
            ....|  ..:.|    |:|:||.|..|::|
Zfish  3290 VNRKP--TLVQGLEGQKITRVACGSSHSVA 3317

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3862NP_608550.1 RCC1 43..99 CDD:395335 12/53 (23%)
ATS1 89..449 CDD:444065 99/376 (26%)
herc2XP_073810441.1 None

Return to query results.
Submit another query.