DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3862 and rcc1l

DIOPT Version :10

Sequence 1:NP_608550.1 Gene:CG3862 / 33261 FlyBaseID:FBgn0031286 Length:454 Species:Drosophila melanogaster
Sequence 2:NP_001007510.1 Gene:rcc1l / 493236 XenbaseID:XB-GENE-963910 Length:449 Species:Xenopus tropicalis


Alignment Length:463 Identity:191/463 - (41%)
Similarity:280/463 - (60%) Gaps:36/463 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLKTRGIVLGISRSYTAKAKRGVLAQDKSKIKEYSPKTTDSHEHRVYVWGFQETGALGL------ 59
            :||.:|   .:.|..:||..:. .|||:..:.:|..:.. ..:.||:||||..|||||:      
 Frog    12 ILKCKG---HLQRHLSAKVSKS-RAQDELPVFQYVGERA-KRKKRVFVWGFSHTGALGIPSFVIP 71

  Fly    60 QTNVKKAKE-RYTEMVHHPTRLQFSNNNEITDVAAGYGFTVYAVNRDDGETLFGSGLNTDSQLGF 123
            :|..||.|: :.|     |.||..  :.:|:..|.|||||:.:....:...::|.|||.|||:||
 Frog    72 ETGRKKPKKFQLT-----PYRLDM--DEKISSAACGYGFTLLSSKTANITKIWGMGLNKDSQIGF 129

  Fly   124 QVKGNPNDPANLDVIIYPTAIKLPRVQGETDEDMRVKSMSAGRAHLVVLTQNGTIFTLGNNSYGQ 188
            . :...:.....:.|:.|:.|.||.   :..::.:|..:|.||||.::||....:|:||||||||
 Frog   130 H-RSRRDRTKGYEYILEPSPIPLPL---DKPQETKVLQVSCGRAHSLILTDKEGVFSLGNNSYGQ 190

  Fly   189 CGRSIIEEERYSKSALIHRISQEDICGKEDEVVQVECGQDHSMFLTKKGRIYTCGWGADGQTGQG 253
            |.|.:||.|.||:|.||||:.:.|     ..||||.||||||:|.|:||.:|:||||||||||.|
 Frog   191 CAREVIEGEIYSESQLIHRVRELD-----SRVVQVACGQDHSLFRTEKGEVYSCGWGADGQTGLG 250

  Fly   254 NYHTAGQITLIGGDVEKEKIVRLSCSSDCVLALNEAGDAFGWGNSEYGQL---DDSELAETQINI 315
            :::.....|.:|||:....||:::...||.||::|.|..:|||||||.||   .||    ||:|:
 Frog   251 HFNVCSNPTKLGGDMAGVNIVQVATYGDCCLAVSEEGQLYGWGNSEYLQLACVTDS----TQVNV 311

  Fly   316 PRALKLTKSIGKIKDVAAGGSFCMALNDQGLVYTWGFGILGFGPFVEQTSKPQHLLPPLFGRNDF 380
            |:.|.. :.:||:|.||.||:.|:|:|..|.|:.||:||||.||...:..:|:.:...|||.:||
 Frog   312 PQHLPF-QHVGKVKHVACGGTGCIAVNGDGSVFVWGYGILGKGPNFLEAQQPEIIPQSLFGLSDF 375

  Fly   381 SNETTVVSIGCGVFHMGAVNSDGDLFMWGKNRFGHLGLGHKKDQFFPFKAAINGKVTKVAYGVDH 445
            :.:..|..:..|:.|..|:|:.|:||:||||..|.||.|..:||:||::..:.|:|..|:.||||
 Frog   376 NPDIRVTKVFSGLGHFAALNNRGELFVWGKNLRGCLGTGRFEDQYFPWRVTVPGEVVDVSCGVDH 440

  Fly   446 TIALCKPF 453
            .:||.|.|
 Frog   441 MVALVKSF 448

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3862NP_608550.1 RCC1 43..99 CDD:395335 25/62 (40%)
ATS1 89..449 CDD:444065 157/362 (43%)
rcc1lNP_001007510.1 ATS1 <51..259 CDD:444065 96/223 (43%)
ATS1 163..>444 CDD:444065 136/290 (47%)

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