DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3862 and Rcc1

DIOPT Version :10

Sequence 1:NP_608550.1 Gene:CG3862 / 33261 FlyBaseID:FBgn0031286 Length:454 Species:Drosophila melanogaster
Sequence 2:NP_523943.1 Gene:Rcc1 / 38669 FlyBaseID:FBgn0002638 Length:547 Species:Drosophila melanogaster


Alignment Length:456 Identity:113/456 - (24%)
Similarity:164/456 - (35%) Gaps:122/456 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 PTRLQFSNNNEITDV--------AAGYGFTVYAVNRDDGETLFGSGL---NTD-SQLGFQVKGNP 129
            |.|...:|||...:.        .|...|.:....|   .|:.|:.|   |.| .|||.      
  Fly     2 PRRKALTNNNNAGEAEQQPPKAKRARIAFHLELPKR---RTVLGNVLVCGNGDVGQLGL------ 57

  Fly   130 NDPANLDVIIYPTAIKLPRVQGETDEDMRVKSMSAGRAHLVVLTQNGTIFTLGNNSYGQCGRSII 194
                ..|::   ...:|..|.|..|    ...:|||..|.:|||::|.|::.|.|..|..||...
  Fly    58 ----GEDIL---ERKRLSPVAGIPD----AVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTS 111

  Fly   195 EEERYSKSALIHRISQEDICGKEDEVVQVECGQDHSMFLTKKGRIYTCGWGA-------DGQTGQ 252
            |:...||..||      |:.||   .:.:..|..||..|.:.||::  .||:       .|.|..
  Fly   112 EDGSESKPDLI------DLPGK---ALCISAGDSHSACLLEDGRVF--AWGSFRDSHGNMGLTID 165

  Fly   253 GNYHTAGQITLIGGDVEKEKIVRLSCSSDCVLALNEAGDAFGWGNSEYGQLDDSELAETQIN--- 314
            ||..|  .|.|:.|.|    ...::..:|.::.|..||..|..|.:|.|||  ..|:|..|:   
  Fly   166 GNKRT--PIDLMEGTV----CCSIASGADHLVILTTAGKVFTVGCAEQGQL--GRLSERSISGEG 222

  Fly   315 --------IPRALKLTKSIGKIKDVAAGGSFCMALNDQGLVYTWGFGILGFGPFVEQTSKPQHLL 371
                    .|..|.:|::  |..:.....::|..:.:......|..|:..|.....:|...:..|
  Fly   223 RRGKRDLLRPTQLIITRA--KPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFAL 285

  Fly   372 PPL---------------------------------FGR------NDFSNETT--------VVSI 389
            .|:                                 :||      .|...:.|        :||:
  Fly   286 TPIKTELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSV 350

  Fly   390 GCGVFHMGAVNSDGDLFMWGKNRFGHLGLGHKKDQFFPFKAA---INGKVTKVAY-GVDHTIALC 450
            |||.....||..||.|:.||......||:|...|:..|....   ..||...:|. |..|.|.|.
  Fly   351 GCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFLV 415

  Fly   451 K 451
            |
  Fly   416 K 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3862NP_608550.1 RCC1 43..99 CDD:395335 7/29 (24%)
ATS1 89..449 CDD:444065 106/440 (24%)
Rcc1NP_523943.1 ATS1 42..389 CDD:444065 95/384 (25%)
Borrelia_P83 <419..>508 CDD:114011
Blue background indicates that the domain is not in the aligned region.

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