Protein Alignment CG3862 and Rpgr

DIOPT Version :10

• Sequence 1: NP_608550.1
• Gene: CG3862 / 33261
• FlyBaseID: FBgn0031286
• Length: 454
• Species: Drosophila melanogaster
• Sequence 2: NP_001360988.1
• Gene: Rpgr / 367733
• RGDID: 1560136
• Length: 1035
• Species: Rattus norvegicus
• Alignment Length: 349
• Identity: 88/349 - (25%)
• Similarity: 143/349 - (40%)
• Gaps: 79/349 - (22%)

  Fly   162 MSAGRAHLVVLTQNGTIFTLGNNSYGQCGRSIIEEERYSKSALIHRISQEDIC---GKEDEVVQV 223
            :|.|..|..::|.|..::..|:|::||.|..       ||||:     .:..|   .|.::|...
  Rat    78 LSCGDEHTAIVTGNNKLYMFGSNNWGQLGLG-------SKSAI-----SKPTCIKALKPEKVKLA 130

  Fly   224 ECGQDHSMFLTKKGRIYTCGWGADGQTGQGNYHTAGQITLIGGDVEKEKIVRLSCSSDCVLALNE 288
            .||::|::..|..|.:|..|...:||.|.|:.........||.....:.|.:||..::...||.|
  Rat   131 ACGRNHTLVSTDTGGVYAAGGNNEGQLGLGDTDDRDTFHQIGFFTPSDIIKQLSAGANTSAALTE 195

  Fly   289 AGDAFGWGNSEYGQL----------------------------------DDSEL------AETQI 313
            .|..|.||::..||:                                  .|.||      ...::
  Rat   196 DGKLFMWGDNSEGQIGLKNKSNVCIPHEVTVGKPISWISCGYYHSAFVTTDGELYTFGEPENGKL 260

  Fly   314 NIPRALKLT-----KSIG---KIKDVAAGGSFCMALNDQGLVYTWG---FGILGFGPFVEQTSKP 367
            .:|..|.:.     :.:|   |:..||.||...:.|.:: :||.:|   ||.||.|.|:.:||:|
  Rat   261 GLPNQLLINHRSPQRVLGIPDKVIQVACGGGHTVVLTEK-VVYAFGLGQFGQLGLGTFLFETSEP 324

  Fly   368 QHLLPPLFGRNDFSNETTVVSIGCGVFHMGAVNSDGDLFMWGKNRFGHLGLGHKK--DQFFPFKA 430
            :.:        |...:..:..|.||..|...:...|.::.:|..|.|.||||.:.  :||||...
  Rat   325 KII--------DRIKDQKISHISCGENHTALMTDIGLMYTFGDGRHGKLGLGMENFTNQFFPTLC 381

  Fly   431 A--INGKVTKVAYGVDHTIALCKP 452
            :  :...|..:|.|..|.:....|
  Rat   382 SNFLKFTVQLIACGGCHMLVFATP 405

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG3862	NP_608550.1	RCC1	43..99	CDD:395335
		ATS1	89..449	CDD:444065	87/344 (25%)
Rpgr	NP_001360988.1	ATS1	78..398	CDD:444065	86/340 (25%)
		235kDa-fam	<508..>761	CDD:130673
		PTZ00341	<637..>870	CDD:173534