DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3862 and herc1

DIOPT Version :9

Sequence 1:NP_608550.1 Gene:CG3862 / 33261 FlyBaseID:FBgn0031286 Length:454 Species:Drosophila melanogaster
Sequence 2:XP_009301513.1 Gene:herc1 / 336598 ZFINID:ZDB-GENE-030131-8542 Length:4867 Species:Danio rerio


Alignment Length:413 Identity:108/413 - (26%)
Similarity:180/413 - (43%) Gaps:64/413 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 VYVWGFQETGALGLQTNVKKAKERYTEMVHHPTRLQFSNNNEITDVAAGYGFTVYAVNRDDGETL 110
            |||||...:..|     |:..:|:..:....|:   ||   :...:.||. :..:.::.|.....
Zfish   369 VYVWGSNSSHQL-----VEGTQEKILQPKLAPS---FS---DAQTIEAGQ-YCTFVISSDGSVRA 421

  Fly   111 FGSGLNTDSQLGFQVKGNPNDPANLDVIIYP--TAIKLPRVQGETDEDMRVKSMSAGRAHLVVLT 173
            .|.|  :..:||.   |:.|:.:.|..:.:.  .|||            :|.|......|.:..|
Zfish   422 CGKG--SYGRLGL---GDSNNQSTLKKLTFEPHRAIK------------KVSSSKGSDGHTLAFT 469

  Fly   174 QNGTIFTLGNNSYGQCGRSIIEEERYSKSALIHRISQEDICGKEDEVVQVECGQDHSMFLTKKGR 238
            ..|.:|:.|:..||:.|......::|.|      :.|..:.||  .||.|..|..||..:::.|.
Zfish   470 SEGEVFSWGDGDYGKLGHGNSSTQKYPK------LIQGPLQGK--VVVCVSAGYRHSAAVSEDGE 526

  Fly   239 IYTCGWGADGQTGQGNYHTAGQITLIGGDVEKEKIVRLSCSSDCVLALNEAGD---AFGWG-NSE 299
            :||.|.|..|:.|.|:.::....||: .|:  ..:..:||.|...:||::.|.   :||.| |.:
Zfish   527 LYTWGEGDFGRLGHGDSNSRNIPTLV-KDI--SNVGEVSCGSSHTIALSKDGRTVWSFGGGDNGK 588

  Fly   300 YGQLDDSELAETQINIPRALKLTKSIGKIKDVAAGGSFCMALNDQGLVYTWGFG-ILGFGPFVEQ 363
            .|..|.:.:.:     |:.::..:.: .|:.|.||....:||...|.||.||.| .||.|     
Zfish   589 LGHGDTNRVYK-----PKVVEALQGM-FIRKVCAGSQSSLALTSTGQVYAWGCGACLGCG----- 642

  Fly   364 TSKPQHLLPPLFGRNDFSNETTVVSIGCGVFHMGAVNSDGDLFMWGKNRFGHLGLGHKKDQFFPF 428
            :|:...|.|.|.   :....|.||.|..|..|..|::.|.:::.||.|..|..|.|:........
Zfish   643 SSEATALRPKLI---EELATTRVVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGNSTGPITKP 704

  Fly   429 KAAI--NG-KVTKVAYGVDHTIA 448
            |..|  :| .:.:::.|..|::|
Zfish   705 KKVIGLDGVAIQQISAGTSHSLA 727

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3862NP_608550.1 RCC1 43..99 CDD:278826 13/52 (25%)
RCC1_2 159..188 CDD:290274 8/28 (29%)
RCC1 175..233 CDD:278826 17/57 (30%)
RCC1_2 220..249 CDD:290274 11/28 (39%)
RCC1 236..286 CDD:278826 14/49 (29%)
RCC1 290..341 CDD:278826 12/54 (22%)
RCC1 345..395 CDD:278826 18/50 (36%)
RCC1_2 386..414 CDD:290274 10/27 (37%)
RCC1 402..449 CDD:278826 13/50 (26%)
herc1XP_009301513.1 RCC1 369..726 CDD:332518 107/410 (26%)
SPRY_HERC1 2004..2161 CDD:293939
UBA_HERC1 2729..2772 CDD:270584
WD40 3406..3773 CDD:330360
WD40 repeat 3419..3452 CDD:293791
WD40 repeat 3479..3514 CDD:293791
WD40 repeat 3527..3569 CDD:293791
WD40 repeat 3575..3611 CDD:293791
WD40 repeat 3618..3660 CDD:293791
WD40 repeat 3665..3710 CDD:293791
WD40 3737..>3831 CDD:330360
WD40 repeat 3749..3784 CDD:293791
RCC1 4004..4351 CDD:332518
HECTc 4479..4847 CDD:238033
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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