DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3862 and HERC2

DIOPT Version :10

Sequence 1:NP_608550.1 Gene:CG3862 / 33261 FlyBaseID:FBgn0031286 Length:454 Species:Drosophila melanogaster
Sequence 2:NP_608388.2 Gene:HERC2 / 33035 FlyBaseID:FBgn0031107 Length:4912 Species:Drosophila melanogaster


Alignment Length:477 Identity:126/477 - (26%)
Similarity:197/477 - (41%) Gaps:121/477 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 VLAQDKSKIKEYS----PKTT-------DSHEH-----------RVYVWGFQETGALGLQTNVKK 65
            :||..:....|||    |.:|       .|||.           .|.|||..:...||   .:|.
  Fly  2943 ILANAQFLASEYSAGVGPGSTAGAGAVSTSHEEAAAAPEQDLPCTVMVWGLNDKEQLG---GLKG 3004

  Fly    66 AKERYTEMVHHPTRLQFSNNNEITDVAAGYGFTVYAVNRDDGETLFGSGLNTDSQLGFQVKGNPN 130
            :|      |..||..|..:......:|.| ..:::.|::|.  .::..|..|:.:||..|..|..
  Fly  3005 SK------VKVPTFSQTISRLRPIHIAGG-SKSLFIVSQDG--KVYACGEGTNGRLGLGVTHNVP 3060

  Fly   131 DPANLDVIIYPTAIKLPRVQGETDEDMRVKSMSAGRAHLVVLTQNGTIFTLGNNSYGQCG---RS 192
            .|..|.|:......|:              ::.:|..|.:.||.:|.:|:.|....|:.|   |:
  Fly  3061 LPHQLPVLRQYVVKKV--------------AVHSGGKHALALTLDGKVFSWGEGEDGKLGHGNRT 3111

  Fly   193 IIEEERYSKSALIHRISQEDICGKEDEVVQVECGQDHSMFLTKKGRIYTCGWGADGQTGQGNYHT 257
            .:::.|     |:..:       :..::..|.||..||..::.:|.:||.|.|..|:.|.|:..|
  Fly  3112 TLDKPR-----LVEAL-------RAKKIRDVACGSSHSAAISSQGELYTWGLGEYGRLGHGDNTT 3164

  Fly   258 AGQ---ITLIGGDVEKEKIVRLSCSS-DC-VLALNEAGDAFGWGNSEYGQL--DDSELAETQINI 315
            ..:   :|.:.|    .::|:::|.| |. .|||.|.|..|.||:.::|:|  ..||.::|    
  Fly  3165 QLKPKLVTALAG----RRVVQVACGSRDAQTLALTEDGAVFSWGDGDFGKLGRGGSEGSDT---- 3221

  Fly   316 PRALKLTKSIGKIKDVAAGGSFCMALNDQGLVYTWGFG---ILGFGPFVEQTSKPQHLLPP---- 373
            |..::....||.:: :..|..|.:||...|.|:|||.|   .||.|       ..||:..|    
  Fly  3222 PHEIERLSGIGVVQ-IECGAQFSLALTRAGEVWTWGKGDYYRLGHG-------GDQHVRKPQPIG 3278

  Fly   374 -LFGRNDFSNETTVVSIGCGVFHMGAVNSDGDLFMWGKNRFGHLGLG----HKK-------DQFF 426
             |.||.       |:.:..|..|..||...|.::.||.|..|..|.|    :||       |..|
  Fly  3279 GLRGRR-------VIHVAVGALHCLAVTDAGQVYAWGDNDHGQQGSGNTFVNKKPALVIGLDAVF 3336

  Fly   427 PFKAAINGKVTKVAYGVDHTIA 448
                     |.:||.|..|:||
  Fly  3337 ---------VNRVACGSSHSIA 3349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3862NP_608550.1 RCC1 43..99 CDD:395335 15/66 (23%)
ATS1 89..449 CDD:444065 104/389 (27%)
HERC2NP_608388.2 ATS1 625..>894 CDD:444065
Cyt-b5 1292..1364 CDD:459698
MIB_HERC2 1928..1988 CDD:461991
UBA_HERC2 2515..2559 CDD:270585
Cul7 2624..2699 CDD:463286
APC10-HERC2 2762..2932 CDD:176485
ATS1 2987..3320 CDD:444065 105/393 (27%)
RCC1 3302..3350 CDD:395335 18/57 (32%)
ATS1 4050..4389 CDD:444065
HECTc 4509..4880 CDD:238033
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.