Protein Alignment CG3862 and Herc1

DIOPT Version :10

• Sequence 1: NP_608550.1
• Gene: CG3862 / 33261
• FlyBaseID: FBgn0031286
• Length: 454
• Species: Drosophila melanogaster
• Sequence 2: XP_063121593.1
• Gene: Herc1 / 315771
• RGDID: 1306366
• Length: 4898
• Species: Rattus norvegicus
• Alignment Length: 417
• Identity: 115/417 - (27%)
• Similarity: 184/417 - (44%)
• Gaps: 64/417 - (15%)

  Fly    46 VYVWGFQETGALGLQTNVKKAKERYTEMVHHPTRLQFSNNNEITDVAAGYGFTVYAVNRDDGETL 110
            ||:||....|.|.         |....::...|...||   :...|..|...|.  |.:.:| |:
  Rat  4036 VYLWGAGRHGQLA---------EAGRNVMVPATAPSFS---QAQQVICGQNCTF--VIQANG-TV 4085

  Fly   111 FGSGLNTDSQLGFQVKGNPNDPANLDVIIYPTAIKLPRVQGETDEDMRVKSMSAGRAHLVVLTQN 175
            ...|..:..:||   :||.:|...|.||        ..:||.....:.....|.|  |.:.||::
  Rat  4086 LACGEGSYGRLG---QGNSDDLHVLTVI--------SALQGFVVTQLVTSCGSDG--HSMALTES 4137

  Fly   176 GTIFTLGNNSYGQCGRSIIEEERYSKSALIHRISQEDICGKEDEVVQVECGQDHSMFLTKKGRIY 240
            |.:|:.|:..||:.|....:.:|..:..       |.:.|  :||||:.||..||..:|..|:::
  Rat  4138 GEVFSWGDGDYGKLGHGNSDRQRRPRQI-------EALQG--EEVVQMSCGFKHSAVVTSDGKLF 4193

  Fly   241 TCGWGADGQTGQGNYHTAG-----QITLIGGDVEKEKIVRLSCSSDCVLALNEAGD-AFGWGNSE 299
            |.|.|..|:.|.||  |:.     ::|.:.|    .:|.:::|..:..||::..|. .:.:|:.:
  Rat  4194 TFGNGDYGRLGLGN--TSNKKLPERVTALEG----YQIGQVACGLNHTLAVSADGSMVWAFGDGD 4252

  Fly   300 YGQLDDSELAETQINIPRALKLTKSIGKIKDVAAGGSFCMALNDQGLVYTWGFG-ILGFGP-FVE 362
            ||:|....  .|..:.|:.:.:...|| ||.||.|..|.:||...|.|||:|.. ::|... ...
  Rat  4253 YGKLGLGN--STAKSSPQKVDVLCGIG-IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR 4314

  Fly   363 QTSKPQHLLPPLFGRNDFSNETTVVSIGCGVFHMGAVNSDGDLFMWGKNRFGHLGLGHKKDQFFP 427
            ..::||. :|.|.|       ..:..:..|..|..|:.|.||::.||.|..|.|||||......|
  Rat  4315 NHNRPQQ-IPVLAG-------VVIEDVAVGAEHTLALASTGDVYAWGSNSEGQLGLGHTNHVREP 4371

  Fly   428 -FKAAINGK-VTKVAYGVDHTIALCKP 452
             ....:.|| :.:::.|..|:.|...|
  Rat  4372 TLVTVLQGKNIRQISAGRCHSAAWTAP 4398

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG3862	NP_608550.1	RCC1	43..99	CDD:395335	12/52 (23%)
		ATS1	89..449	CDD:444065	103/369 (28%)
Herc1	XP_063121593.1	None