DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3862 and Herc2

DIOPT Version :10

Sequence 1:NP_608550.1 Gene:CG3862 / 33261 FlyBaseID:FBgn0031286 Length:454 Species:Drosophila melanogaster
Sequence 2:XP_006229362.1 Gene:Herc2 / 308669 RGDID:1307989 Length:4836 Species:Rattus norvegicus


Alignment Length:438 Identity:111/438 - (25%)
Similarity:188/438 - (42%) Gaps:74/438 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 SKIKEYSP--KTTDSHEHRVYVWGFQETGALGLQTNVKKAKERYTEMVHHPTRLQFSNNNEITDV 91
            |.|::.:|  ::|.:...:|:|||..:...||   .:|.:|      :..|:..:..:...:..|
  Rat  2943 SLIRKKTPGLESTATIRTKVFVWGLNDKDQLG---GLKGSK------IKVPSFSETLSALNVVQV 2998

  Fly    92 AAGYGFTVYAVNRDDGETLFGSGLNTDSQLGFQVKGNPNDPANLDVIIYPTAIKLPR-VQGETDE 155
            |.| ..:::||..:.  .::..|..|:.:||..:...              .:.:|| :...:..
  Rat  2999 AGG-SKSLFAVTVEG--KVYSCGEATNGRLGLGMSSG--------------TVPIPRQITALSSY 3046

  Fly   156 DMRVKSMSAGRAHLVVLTQNGTIFTLGNNSYGQCGRSIIEEERYSKSALIHRISQEDICGKEDEV 220
            .::..::.:|..|...||.:|.:|:.|....|:.|.  .......|..||..:       |...:
  Rat  3047 VVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGH--FSRMNCDKPRLIEAL-------KTKRI 3102

  Fly   221 VQVECGQDHSMFLTKKGRIYTCGWGADGQTGQGNYHTAGQI------TLIGGDVEKEKIVRLSCS 279
            ..:.||..||..||..|.:||.|.|..|:.|.|:..|  |:      .|:|     .::::::|.
  Rat  3103 RDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTT--QLKPKMVKVLLG-----HRVIQVACG 3160

  Fly   280 S-DC-VLALNEAGDAFGWGNSEYGQLDDSELAETQINIPRALKLTKSIGKIKDVAAGGSFCMALN 342
            | |. .|||.:.|..|.||:.::|:|...  .....|||:.::.....| :..:..|..|.:||.
  Rat  3161 SRDAQTLALTDEGLVFSWGDGDFGKLGRG--GSEGCNIPQNIERLNGQG-VCQIECGAQFSLALT 3222

  Fly   343 DQGLVYTWGFG---ILGFGPFVEQTSKPQHLLPPLFGRNDFSNETTVVSIGCGVFHMGAVNSDGD 404
            ..|:|:|||.|   .||.|..| ...||| ::..|.|:.       :|.:..|..|..||...|.
  Rat  3223 KSGVVWTWGKGDYFRLGHGSDV-HVRKPQ-VVEGLRGKK-------IVHVAVGALHCLAVTDSGQ 3278

  Fly   405 LFMWGKNRFGHLGLGHKKDQFFPFKAAING----KVTKVAYGVDHTIA 448
            ::.||.|..|..|.|.......|  ..:.|    |:|:||.|..|::|
  Rat  3279 VYAWGDNDHGQQGNGTTTVNRKP--TLVQGLEGQKITRVACGSSHSVA 3324

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3862NP_608550.1 RCC1 43..99 CDD:395335 12/55 (22%)
ATS1 89..449 CDD:444065 98/376 (26%)
Herc2XP_006229362.1 ATS1 456..776 CDD:444065
Cyt-b5 1212..1283 CDD:459698
MIB_HERC2 1871..1931 CDD:461991
UBA_HERC2 2461..2508 CDD:270585
Cul7 2555..2632 CDD:463286
ZZ_HERC2 2707..2751 CDD:239084
APC10-HERC2 2766..2911 CDD:176485
ATS1 2962..3302 CDD:444065 99/395 (25%)
ATS1 3946..4294 CDD:444065
HECTc 4423..4794 CDD:238033
Blue background indicates that the domain is not in the aligned region.

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