DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3862 and Herc1

DIOPT Version :9

Sequence 1:NP_608550.1 Gene:CG3862 / 33261 FlyBaseID:FBgn0031286 Length:454 Species:Drosophila melanogaster
Sequence 2:XP_006511166.1 Gene:Herc1 / 235439 MGIID:2384589 Length:4885 Species:Mus musculus


Alignment Length:417 Identity:115/417 - (27%)
Similarity:184/417 - (44%) Gaps:64/417 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 VYVWGFQETGALGLQTNVKKAKERYTEMVHHPTRLQFSNNNEITDVAAGYGFTVYAVNRDDGETL 110
            ||:||....|.|.         |....::...|...||   :...|..|...|.  |.:.:| |:
Mouse  4023 VYLWGAGRHGQLA---------EAGRNVMVPATAPSFS---QAQQVICGQNCTF--VIQANG-TV 4072

  Fly   111 FGSGLNTDSQLGFQVKGNPNDPANLDVIIYPTAIKLPRVQGETDEDMRVKSMSAGRAHLVVLTQN 175
            ...|..:..:||   :||.:|...|.||        ..:||.....:.....|.|  |.:.||::
Mouse  4073 LACGEGSYGRLG---QGNSDDLHVLTVI--------SALQGFVVTQLVTSCGSDG--HSMALTES 4124

  Fly   176 GTIFTLGNNSYGQCGRSIIEEERYSKSALIHRISQEDICGKEDEVVQVECGQDHSMFLTKKGRIY 240
            |.:|:.|:..||:.|....:.:|..:..       |.:.|  :||||:.||..||..:|..|:::
Mouse  4125 GEVFSWGDGDYGKLGHGNSDRQRRPRQI-------EALQG--EEVVQMSCGFKHSAVVTSDGKLF 4180

  Fly   241 TCGWGADGQTGQGNYHTAG-----QITLIGGDVEKEKIVRLSCSSDCVLALNEAGD-AFGWGNSE 299
            |.|.|..|:.|.||  |:.     ::|.:.|    .:|.:::|..:..||::..|. .:.:|:.:
Mouse  4181 TFGNGDYGRLGLGN--TSNKKLPERVTALEG----YQIGQVACGLNHTLAVSADGSMVWAFGDGD 4239

  Fly   300 YGQLDDSELAETQINIPRALKLTKSIGKIKDVAAGGSFCMALNDQGLVYTWGFG-ILGFGP-FVE 362
            ||:|....  .|..:.|:.:.:...|| ||.||.|..|.:||...|.|||:|.. ::|... ...
Mouse  4240 YGKLGLGN--STAKSSPQKVDVLCGIG-IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR 4301

  Fly   363 QTSKPQHLLPPLFGRNDFSNETTVVSIGCGVFHMGAVNSDGDLFMWGKNRFGHLGLGHKKDQFFP 427
            ..::||. :|.|.|       ..:..:..|..|..|:.|.||::.||.|..|.|||||......|
Mouse  4302 NHNRPQQ-IPVLAG-------VVIEDVAVGAEHTLALASTGDVYAWGSNSEGQLGLGHTNHVREP 4358

  Fly   428 -FKAAINGK-VTKVAYGVDHTIALCKP 452
             ....:.|| :.:::.|..|:.|...|
Mouse  4359 TLVTVLQGKNIRQISAGRCHSAAWTAP 4385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3862NP_608550.1 RCC1 43..99 CDD:278826 12/52 (23%)
RCC1_2 159..188 CDD:290274 9/28 (32%)
RCC1 175..233 CDD:278826 17/57 (30%)
RCC1_2 220..249 CDD:290274 12/28 (43%)
RCC1 236..286 CDD:278826 14/54 (26%)
RCC1 290..341 CDD:278826 15/51 (29%)
RCC1 345..395 CDD:278826 12/51 (24%)
RCC1_2 386..414 CDD:290274 9/27 (33%)
RCC1 402..449 CDD:278826 16/48 (33%)
Herc1XP_006511166.1 ATS1 374..731 CDD:227511
SPRY_HERC1 2039..2196 CDD:293939
UBA_HERC1 2760..2803 CDD:270584
WD40 3448..3799 CDD:392136
WD40 repeat 3456..3499 CDD:293791
WD40 repeat 3513..3548 CDD:293791
WD40 repeat 3610..3648 CDD:293791
WD40 repeat 3653..3689 CDD:293791
WD40 repeat 3697..3736 CDD:293791
WD40 repeat 3774..3810 CDD:293791
ATS1 4022..4370 CDD:227511 111/400 (28%)
HECTc 4497..4865 CDD:238033
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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