DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3862 and Herc1

DIOPT Version :10

Sequence 1:NP_608550.1 Gene:CG3862 / 33261 FlyBaseID:FBgn0031286 Length:454 Species:Drosophila melanogaster
Sequence 2:XP_006511166.1 Gene:Herc1 / 235439 MGIID:2384589 Length:4885 Species:Mus musculus


Alignment Length:417 Identity:115/417 - (27%)
Similarity:184/417 - (44%) Gaps:64/417 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 VYVWGFQETGALGLQTNVKKAKERYTEMVHHPTRLQFSNNNEITDVAAGYGFTVYAVNRDDGETL 110
            ||:||....|.|.         |....::...|...||   :...|..|...|.  |.:.:| |:
Mouse  4023 VYLWGAGRHGQLA---------EAGRNVMVPATAPSFS---QAQQVICGQNCTF--VIQANG-TV 4072

  Fly   111 FGSGLNTDSQLGFQVKGNPNDPANLDVIIYPTAIKLPRVQGETDEDMRVKSMSAGRAHLVVLTQN 175
            ...|..:..:||   :||.:|...|.||        ..:||.....:.....|.|  |.:.||::
Mouse  4073 LACGEGSYGRLG---QGNSDDLHVLTVI--------SALQGFVVTQLVTSCGSDG--HSMALTES 4124

  Fly   176 GTIFTLGNNSYGQCGRSIIEEERYSKSALIHRISQEDICGKEDEVVQVECGQDHSMFLTKKGRIY 240
            |.:|:.|:..||:.|....:.:|..:..       |.:.|  :||||:.||..||..:|..|:::
Mouse  4125 GEVFSWGDGDYGKLGHGNSDRQRRPRQI-------EALQG--EEVVQMSCGFKHSAVVTSDGKLF 4180

  Fly   241 TCGWGADGQTGQGNYHTAG-----QITLIGGDVEKEKIVRLSCSSDCVLALNEAGD-AFGWGNSE 299
            |.|.|..|:.|.||  |:.     ::|.:.|    .:|.:::|..:..||::..|. .:.:|:.:
Mouse  4181 TFGNGDYGRLGLGN--TSNKKLPERVTALEG----YQIGQVACGLNHTLAVSADGSMVWAFGDGD 4239

  Fly   300 YGQLDDSELAETQINIPRALKLTKSIGKIKDVAAGGSFCMALNDQGLVYTWGFG-ILGFGP-FVE 362
            ||:|....  .|..:.|:.:.:...|| ||.||.|..|.:||...|.|||:|.. ::|... ...
Mouse  4240 YGKLGLGN--STAKSSPQKVDVLCGIG-IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR 4301

  Fly   363 QTSKPQHLLPPLFGRNDFSNETTVVSIGCGVFHMGAVNSDGDLFMWGKNRFGHLGLGHKKDQFFP 427
            ..::||. :|.|.|       ..:..:..|..|..|:.|.||::.||.|..|.|||||......|
Mouse  4302 NHNRPQQ-IPVLAG-------VVIEDVAVGAEHTLALASTGDVYAWGSNSEGQLGLGHTNHVREP 4358

  Fly   428 -FKAAINGK-VTKVAYGVDHTIALCKP 452
             ....:.|| :.:::.|..|:.|...|
Mouse  4359 TLVTVLQGKNIRQISAGRCHSAAWTAP 4385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3862NP_608550.1 RCC1 43..99 CDD:395335 12/52 (23%)
ATS1 89..449 CDD:444065 103/369 (28%)
Herc1XP_006511166.1 ATS1 374..703 CDD:444065
RCC1 683..733 CDD:395335
SPRY_HERC1 2039..2196 CDD:293939
UBA_HERC1 2760..2803 CDD:270584
WD40 <3448..3802 CDD:441893
WD40 repeat 3456..3499 CDD:293791
WD40 repeat 3513..3548 CDD:293791
WD40 repeat 3610..3648 CDD:293791
WD40 repeat 3653..3689 CDD:293791
WD40 repeat 3697..3736 CDD:293791
WD40 repeat 3774..3810 CDD:293791
ATS1 4023..4359 CDD:444065 108/389 (28%)
HECTc 4497..4865 CDD:238033
Blue background indicates that the domain is not in the aligned region.

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