DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3862 and ran-3

DIOPT Version :10

Sequence 1:NP_608550.1 Gene:CG3862 / 33261 FlyBaseID:FBgn0031286 Length:454 Species:Drosophila melanogaster
Sequence 2:NP_495753.1 Gene:ran-3 / 174332 WormBaseID:WBGene00004304 Length:569 Species:Caenorhabditis elegans


Alignment Length:362 Identity:95/362 - (26%)
Similarity:145/362 - (40%) Gaps:75/362 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   142 TAIKLPR-VQGETDEDMRVKSMSAGRAHLVVLTQNGTIFTLGNNSYGQCGRSIIEEE----RYSK 201
            |..|.|| |....:|.::.....||..|..|||..|.::..|.|..|......:|:|    .::|
 Worm   169 TTTKKPRKVDIFEEEGLKPLQAVAGGVHSAVLTSEGEVYMCGINEKGTVPAEGVEKEGSTDEFAK 233

  Fly   202 SALIHRISQEDICGKEDEVVQVECGQDHSMFLTKKGRIYTCGWGADGQTGQGN------YHTAGQ 260
            ...     :||| .||.::|.:..|...:..||.:|.:  ..|| :.:...||      .|...:
 Worm   234 VKF-----EEDI-EKEGKIVMLAAGASFTAALTDQGSV--IAWG-NLRNSNGNVDVHPLLHKMQE 289

  Fly   261 ITLIGGDVEKEKIVRLSCSSDCVLALNEAGDAFGWGNSEYGQLDDSELAET------------QI 313
            ..::.....|.|||:::...:.::.|:|.|....:|:.|.|||..|...:|            .:
 Worm   290 APVVIVHQAKRKIVKIAAGENHLVMLDEKGCLLTFGDGEMGQLGRSSRTKTIRSKYMCDESGDHL 354

  Fly   314 NIPRALKLTKSIGKI-----KDVAAGGSFCMALNDQGLVYTWG---FGILGF-------GPFVEQ 363
            .:|...   |..||.     |:|.|.|.:.:...:.|..|.:|   :..||.       |...:.
 Worm   355 LVPLRF---KHKGKFFDVVAKNVFASGFWTIVHGEDGKYYAFGLNNYAQLGIKVDEADVGQDGQD 416

  Fly   364 TSKPQHLLP---PLFGRNDFSNETTVVSIGCGVFHMGAVNSDGDLFMWGKNRFGHLGLGH---KK 422
            ..:.:..||   |.||.     |.|.|:|. ||.|:..:.|||.:|..|||....||||:   |.
 Worm   417 NRELRVFLPAEAPAFGA-----ERTFVNIE-GVQHVVILGSDGKVFAMGKNTDNALGLGNWTGKD 475

  Fly   423 D---------QFFPFKAAING----KVTKVAYGVDHT 446
            |         |...|.:.|.|    ..|.:|:..|.|
 Worm   476 DQQHWLYDTIQEIEFDSKIVGVSAKLATSIAWSEDGT 512

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3862NP_608550.1 RCC1 43..99 CDD:395335
ATS1 89..449 CDD:444065 95/362 (26%)
ran-3NP_495753.1 DTHCT 70..176 CDD:462355 3/6 (50%)
ATS1 189..527 CDD:444065 89/342 (26%)
RCC1 510..565 CDD:395335 2/3 (67%)
Blue background indicates that the domain is not in the aligned region.

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