DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3862 and Herc2

DIOPT Version :10

Sequence 1:NP_608550.1 Gene:CG3862 / 33261 FlyBaseID:FBgn0031286 Length:454 Species:Drosophila melanogaster
Sequence 2:NP_034548.2 Gene:Herc2 / 15204 MGIID:103234 Length:4836 Species:Mus musculus


Alignment Length:438 Identity:111/438 - (25%)
Similarity:188/438 - (42%) Gaps:74/438 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 SKIKEYSP--KTTDSHEHRVYVWGFQETGALGLQTNVKKAKERYTEMVHHPTRLQFSNNNEITDV 91
            |.|::.:|  ::|.:...:|:|||..:...||   .:|.:|      :..|:..:..:...:..|
Mouse  2943 SLIRKKTPGLESTATIRTKVFVWGLNDKDQLG---GLKGSK------IKVPSFSETLSALNVVQV 2998

  Fly    92 AAGYGFTVYAVNRDDGETLFGSGLNTDSQLGFQVKGNPNDPANLDVIIYPTAIKLPR-VQGETDE 155
            |.| ..:::||..:.  .::..|..|:.:||..:...              .:.:|| :...:..
Mouse  2999 AGG-SKSLFAVTVEG--KVYSCGEATNGRLGLGMSSG--------------TVPIPRQITALSSY 3046

  Fly   156 DMRVKSMSAGRAHLVVLTQNGTIFTLGNNSYGQCGRSIIEEERYSKSALIHRISQEDICGKEDEV 220
            .::..::.:|..|...||.:|.:|:.|....|:.|.  .......|..||..:       |...:
Mouse  3047 VVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGH--FSRMNCDKPRLIEAL-------KTKRI 3102

  Fly   221 VQVECGQDHSMFLTKKGRIYTCGWGADGQTGQGNYHTAGQI------TLIGGDVEKEKIVRLSCS 279
            ..:.||..||..||..|.:||.|.|..|:.|.|:..|  |:      .|:|     .::::::|.
Mouse  3103 RDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTT--QLKPKMVKVLLG-----HRVIQVACG 3160

  Fly   280 S-DC-VLALNEAGDAFGWGNSEYGQLDDSELAETQINIPRALKLTKSIGKIKDVAAGGSFCMALN 342
            | |. .|||.:.|..|.||:.::|:|...  .....|||:.::.....| :..:..|..|.:||.
Mouse  3161 SRDAQTLALTDEGLVFSWGDGDFGKLGRG--GSEGCNIPQNIERLNGQG-VCQIECGAQFSLALT 3222

  Fly   343 DQGLVYTWGFG---ILGFGPFVEQTSKPQHLLPPLFGRNDFSNETTVVSIGCGVFHMGAVNSDGD 404
            ..|:|:|||.|   .||.|..| ...||| ::..|.|:.       :|.:..|..|..||...|.
Mouse  3223 KSGVVWTWGKGDYFRLGHGSDV-HVRKPQ-VVEGLRGKK-------IVHVAVGALHCLAVTDSGQ 3278

  Fly   405 LFMWGKNRFGHLGLGHKKDQFFPFKAAING----KVTKVAYGVDHTIA 448
            ::.||.|..|..|.|.......|  ..:.|    |:|:||.|..|::|
Mouse  3279 VYAWGDNDHGQQGNGTTTVNRKP--TLVQGLEGQKITRVACGSSHSVA 3324

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3862NP_608550.1 RCC1 43..99 CDD:395335 12/55 (22%)
ATS1 89..449 CDD:444065 98/376 (26%)
Herc2NP_034548.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 58..90
RCC1 1-1 416..462
ATS1 456..776 CDD:444065
RCC1 1-2 463..513
RCC1 1-3 514..569
RCC1 1-4 570..621
RCC1 1-5 624..675
RCC1 1-6 676..727
RCC1 1-7 729..779
Cyt-b5 1212..1283 CDD:459698
MIB_HERC2 1871..1931 CDD:461991
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2351..2376
UBA_HERC2 2461..2508 CDD:270585
Cul7 2555..2632 CDD:463286
SH3_15 2640..2697 CDD:465720
ZZ_HERC2 2707..2751 CDD:239084
APC10-HERC2 2766..2911 CDD:176485
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2928..2947 2/3 (67%)
RCC1 2-1 2959..3010 14/60 (23%)
ATS1 2962..3302 CDD:444065 99/395 (25%)
RCC1 2-2 3011..3065 9/69 (13%)
RCC1 2-3 3066..3117 14/59 (24%)
RCC1 2-4 3119..3169 16/56 (29%)
RCC1 2-5 3172..3223 14/53 (26%)
RCC1 2-6 3225..3275 20/58 (34%)
RCC1 2-7 3276..3327 16/51 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 3479..3499
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 3517..3537
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 3604..3632
ATS1 3946..4294 CDD:444065
RCC1 3-1 3953..4004
RCC1 3-2 4006..4058
RCC1 3-3 4060..4110
RCC1 3-4 4112..4164
RCC1 3-5 4166..4216
RCC1 3-6 4218..4268
RCC1 3-7 4270..4320
HECTc 4423..4794 CDD:238033
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 4806..4836
Blue background indicates that the domain is not in the aligned region.

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