DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3862 and nek9

DIOPT Version :9

Sequence 1:NP_608550.1 Gene:CG3862 / 33261 FlyBaseID:FBgn0031286 Length:454 Species:Drosophila melanogaster
Sequence 2:XP_012823572.1 Gene:nek9 / 100216232 XenbaseID:XB-GENE-974101 Length:942 Species:Xenopus tropicalis


Alignment Length:416 Identity:94/416 - (22%)
Similarity:157/416 - (37%) Gaps:113/416 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 SHEHRVYVWGFQETGALGLQTNVKKAKERYTEMVHHPTRLQ-FSNNNEITDVAAGYG-FTVYA-- 101
            |....|||||..:|                     .|.:|. |........|.||.. |.|..  
 Frog   326 SRSSEVYVWGGGKT---------------------TPQKLDVFKGGCRARQVCAGDAHFAVVTVE 369

  Fly   102 ------VNRDDGETLFGSGLNTDSQLGFQVKGNPNDPANLDVIIYPTAIKLPRVQGETDEDMRVK 160
                  ||...|..|.|       |||...:.:...|.:::           ::||::     |:
 Frog   370 KELYTWVNMQGGSKLHG-------QLGHGDRASYRQPKHVE-----------KLQGKS-----VQ 411

  Fly   161 SMSAGRAHLVVLTQNGTIFTLGNNSYG------QCGRSIIEEERYSKSALIHRISQEDICGKEDE 219
            .:|.|....|.::..|.:::.|::.||      ..|..::|      ..|:.....|       .
 Frog   412 QVSCGSDFTVCISDEGQLYSFGSDYYGCLGVNQSAGAEVLE------PLLVDFFLNE-------P 463

  Fly   220 VVQVECGQDHSMFLTKKGRIYTCGWGADGQTG---QGNYHTAGQITLIGGDVEKEK-IVRLSCSS 280
            |.||.||..|.:.||:...:|:.|.|..|:.|   :.:.::..::     :|:::. ||.:.|.|
 Frog   464 VEQVSCGDSHIIALTRSKCVYSWGCGEYGRLGLDSEDDVYSPQKV-----EVQRDLCIVNVCCGS 523

  Fly   281 DCVLALNEAGDAFGWGNSEYGQLDDSELAETQIN------IPRALKLT----KSIGKIKDVAAGG 335
            |....|...|.....|.:|:.:|..::.....||      :|....||    .|..||:.::.|.
 Frog   524 DGSFLLTLTGKVLACGLNEHNKLGLNQYTAGIINHEAFQEVPYTTSLTLAKQLSFYKIRSISPGR 588

  Fly   336 SFCMALNDQGLVYTWG---FGILGFGPFVEQTSKPQH-----LLPPLFGRNDFSNETTVVSIGCG 392
            :...|::::|.:.|:|   .|.||.|.:      .:|     |..||.|:.       |:.:.||
 Frog   589 THTAAIDERGRLLTFGSNKCGQLGVGDY------RKHLGINLLGGPLGGKQ-------VIRVSCG 640

  Fly   393 VFHMGAVNSDGDLFMWGKNRFGHLGL 418
            .....|..:|..:|.||....|.|.:
 Frog   641 DEFTIAATADNHIFAWGNGGNGRLAM 666

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3862NP_608550.1 RCC1 43..99 CDD:278826 13/57 (23%)
RCC1_2 159..188 CDD:290274 8/34 (24%)
RCC1 175..233 CDD:278826 14/63 (22%)
RCC1_2 220..249 CDD:290274 11/28 (39%)
RCC1 236..286 CDD:278826 11/53 (21%)
RCC1 290..341 CDD:278826 13/60 (22%)
RCC1 345..395 CDD:278826 15/57 (26%)
RCC1_2 386..414 CDD:290274 8/27 (30%)
RCC1 402..449 CDD:278826 6/17 (35%)
nek9XP_012823572.1 STKc_Nek9 33..290 CDD:270860
ATS1 370..708 CDD:227511 79/351 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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