Protein Alignment Clp and CPSF30

DIOPT Version :9

• Sequence 1: NP_477156.1
• Gene: Clp / 33259
• FlyBaseID: FBgn0015621
• Length: 296
• Species: Drosophila melanogaster
• Sequence 2: NP_174334.2
• Gene: CPSF30 / 839925
• AraportID: AT1G30460
• Length: 631
• Species: Arabidopsis thaliana
• Alignment Length: 285
• Identity: 75/285 - (26%)
• Similarity: 110/285 - (38%)
• Gaps: 85/285 - (29%)

  Fly     5 LANVSGLQFKAERDL----IEQVGAIPL--------------PFYGMDKSIAAVCNFITRNGQEC 51
            :.:..||.|..|..|    ::...::|:              |.|  |.|.|.|..        .
plant     1 MEDADGLSFDFEGGLDSGPVQNTASVPVAPPENSSSAAVNVAPTY--DHSSATVAG--------A 55

  Fly    52 DKGSACPFRHIRGDRTIVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLH 116
            .:|        |..|..||:|||||||.|||.|.|||::|..:||.|.|:..:..|..::|.:.|
plant    56 GRG--------RSFRQTVCRHWLRGLCMKGDACGFLHQFDKARMPICRFFRLYGECREQDCVYKH 112

  Fly   117 IDPQSKVKDCPWYKRGFCRHGPHCRHQHLRRVLCMDYLAGFCPEGPSCKHMHPHFELPPLAE-LG 180
            .:  ..:|:|..||.|||.:||.||::|.:.            .||.          ||:.| |.
plant   113 TN--EDIKECNMYKLGFCPNGPDCRYRHAKL------------PGPP----------PPVEEVLQ 153

  Fly   181 KDQLHKKLPTCHY-CGELGHKANSCKQYVGSLEHRNNINAMDHSGGHSGGYSGHSGHIEGADDMQ 244
            |.|   :|.|.:| ...|....|...|    |:.|..            |.....|..:.:.::|
plant   154 KIQ---QLTTYNYGTNRLYQARNVAPQ----LQDRPQ------------GQVPMQGQPQESGNLQ 199

  Fly   245 SNHHSQP----HGPGFVKVPTPLEE 265
            .....||    |......:|.|.::
plant   200 QQQQQQPQQSQHQVSQTLIPNPADQ 224

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Clp	NP_477156.1	YTH1	12..175	CDD:227416	51/180 (28%)
		ZnF_C3H1	66..90	CDD:214632	17/23 (74%)
CPSF30	NP_174334.2	YTH1	<59..>138	CDD:227416	37/80 (46%)
		YTH	238..372	CDD:410979

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5084
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0002750
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
	4	3.770